1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc11g011260.1.1

Solyc11g011260.1.1 (RGA2, GAI, Solyc11g011260)


Aliases : RGA2, GAI, Solyc11g011260

Description : DELLA-type gibberellin signal transducer. transcription factor (GRAS). transcription factor (DELLA)


Gene families : OG0001108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001108_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g011260.1.1

Target Alias Description ECC score Gene Family Method Actions
AT1G14920 RGA2, GAI GRAS family transcription factor family protein 0.07 OrthoFinder output from all 47 species
AT2G01570 RGA, RGA1 GRAS family transcription factor family protein 0.06 OrthoFinder output from all 47 species
Adi_g082189 RGL1, RGL GRAS-type transcription factor *(RAD1) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0045.g029812 RGL2 GRAS-type transcription factor & original description: CDS=1-2046 0.03 OrthoFinder output from all 47 species
Azfi_s0460.g072066 RGA2, GAI GRAS-type transcription factor & original description: CDS=1-2034 0.03 OrthoFinder output from all 47 species
Ehy_g14093 RGA2, GAI transcription factor *(DELLA) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g32516 RGL1, RGL GRAS-type transcription factor *(RAD1) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017422 RGA2, GAI GRAS-type transcription factor & original description: CDS=1-1875 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009583 detection of light stimulus IEP HCCA
BP GO:0009584 detection of visible light IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
BP GO:0018298 obsolete protein-chromophore linkage IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0051606 detection of stimulus IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 199 574
IPR021914 TF_DELLA_N 42 107
No external refs found!