1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc11g008900.2.1

Solyc11g008900.2.1 (ZFN1, Solyc11g008900)


Aliases : ZFN1, Solyc11g008900

Description : C3H zinc finger transcription factor


Gene families : OG0000297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000297_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g008900.2.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00248880 ZFN1,... RNA biosynthesis.transcriptional activation.C3H zinc... 0.04 OrthoFinder output from all 47 species
AMTR_s00074p00110430 ZFN2,... RNA biosynthesis.transcriptional activation.C3H zinc... 0.04 OrthoFinder output from all 47 species
AT5G16540 ZFN3 zinc finger nuclease 3 0.08 OrthoFinder output from all 47 species
Adi_g061091 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Adi_g075179 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Adi_g075180 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Aev_g10552 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Als_g10254 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Als_g51960 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0013.g013252 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Ceric.16G041800.1 ZFN1, Ceric.16G041800 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Dde_g06624 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Gb_32584 ZFN1 C3H zinc finger transcription factor 0.01 OrthoFinder output from all 47 species
LOC_Os12g18120.1 LOC_Os12g18120 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Lfl_g09725 HUA1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Lfl_g16319 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Lfl_g17101 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Msp_g06264 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Nbi_g05812 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Pir_g10339 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Pnu_g22509 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Pnu_g30586 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Ppi_g03163 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Ppi_g29535 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004836 ZFN1 regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Sam_g15873 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Sam_g37296 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Spa_g21682 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Spa_g29873 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Tin_g05215 ZFN3 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Tin_g05557 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 140 164
IPR000571 Znf_CCCH 94 118
IPR000571 Znf_CCCH 340 365
IPR000571 Znf_CCCH 294 319
IPR000571 Znf_CCCH 48 73
No external refs found!