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  5. Solyc11g008400.2.1

Solyc11g008400.2.1 (ASK4, SK4, Solyc11g008400)


Aliases : ASK4, SK4, Solyc11g008400

Description : target protein binding component SKP1/ASK1 of SKP1-CUL1-FBX (SCF) E3 ligase complexes


Gene families : OG0000379 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000379_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g008400.2.1
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
AT2G03190 ASK16, SK16 SKP1-like 16 0.04 OrthoFinder output from all 47 species
AT2G25700 ASK3, SK3 SKP1-like 3 0.03 OrthoFinder output from all 47 species
Cba_g46809 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.01 OrthoFinder output from all 47 species
Dac_g39230 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Gb_41410 ASK1, ATSKP1,... target protein binding component SKP1/ASK1 of... 0.01 OrthoFinder output from all 47 species
LOC_Os09g10200.1 ASK1, ATSKP1,... target protein binding component SKP1/ASK1 of... 0.01 OrthoFinder output from all 47 species
Lfl_g21720 ASK2, SKP1B ASK-type linker component of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Lfl_g23898 ASK4, SK4 ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Lfl_g27087 ASK2, SKP1B ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Lfl_g39045 ASK2, SKP1B ASK-type linker component of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Msp_g40582 ASK2, SKP1B not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g32738 ASK2, SKP1B ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Pir_g61945 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Ppi_g40477 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR016072 Skp1_comp_dimer 123 169
IPR016073 Skp1_comp_POZ 9 67
No external refs found!