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  5. Solyc11g007800.3.1

Solyc11g007800.3.1 (Solyc11g007800)


Aliases : Solyc11g007800

Description : component POP1 of RNA-dependent RNase P complex


Gene families : OG0005078 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005078_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g007800.3.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
Ceric.26G047600.1 Ceric.26G047600 component *(POP1) of RNA-dependent RNase P complex &... 0.04 OrthoFinder output from all 47 species
Cre04.g214690 No alias RNA processing.ribonuclease activities.RNase P... 0.04 OrthoFinder output from all 47 species
Mp3g16910.1 No alias component POP1 of RNA-dependent RNase P complex 0.11 OrthoFinder output from all 47 species
Spa_g21632 No alias component *(POP1) of RNA-dependent RNase P complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e035916_P003 Zm00001e035916 component POP1 of RNA-dependent RNase P complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
CC GO:0090730 Las1 complex IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
CC GO:1902555 endoribonuclease complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
CC GO:1905348 endonuclease complex IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR012590 POPLD_dom 484 559
IPR009723 Pop1_N 120 177
No external refs found!