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  5. Solyc11g005440.2.1

Solyc11g005440.2.1 (Solyc11g005440)


Aliases : Solyc11g005440

Description : no hits & (original description: none)


Gene families : OG0000995 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000995_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g005440.2.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AT5G09840 No alias Putative endonuclease or glycosyl hydrolase 0.08 OrthoFinder output from all 47 species
AT5G64710 No alias Putative endonuclease or glycosyl hydrolase 0.03 OrthoFinder output from all 47 species
Adi_g060136 EDA32 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g03991 No alias endoribonuclease *(MNU) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06398 EDA32 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13658 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04911 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g17311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01026616001 No alias No description available 0.11 OrthoFinder output from all 47 species
LOC_Os12g06560.1 LOC_Os12g06560 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g10988 EDA32 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25535 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g51716 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo419584 No alias No description available 0.03 OrthoFinder output from all 47 species
Spa_g13107 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090730 Las1 complex IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1902555 endoribonuclease complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
CC GO:1905348 endonuclease complex IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR021139 NYN_MARF1 61 196
IPR025605 OST-HTH/LOTUS_dom 268 331
IPR025605 OST-HTH/LOTUS_dom 703 761
IPR025677 OST-HTH-assoc_dom 582 624
No external refs found!