1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc11g005010.3.1

Solyc11g005010.3.1 (Solyc11g005010)


Aliases : Solyc11g005010

Description : RAB-GTPase-activating protein (RAB-GAP)


Gene families : OG0006033 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006033_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g005010.3.1
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AT2G30710 No alias Ypt/Rab-GAP domain of gyp1p superfamily protein 0.05 OrthoFinder output from all 47 species
Aev_g13024 No alias Rab GTPase-activating protein *(RabGAP4) & original... 0.02 OrthoFinder output from all 47 species
Aop_g61637 No alias Rab GTPase-activating protein *(RabGAP4) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021350.39 No alias Vesicle trafficking.regulation of membrane tethering and... 0.01 OrthoFinder output from all 47 species
Dcu_g07636 No alias Rab GTPase-activating protein *(RabGAP4) & original... 0.02 OrthoFinder output from all 47 species
Dde_g02217 No alias Rab GTPase-activating protein *(RabGAP4) & original... 0.02 OrthoFinder output from all 47 species
Gb_41737 No alias RAB-GTPase-activating protein (RAB-GAP) 0.04 OrthoFinder output from all 47 species
Len_g00657 No alias Rab GTPase-activating protein *(RabGAP4) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g05449 No alias Rab GTPase-activating protein *(RabGAP4) & original... 0.05 OrthoFinder output from all 47 species
MA_10432074g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g29406 No alias Rab GTPase-activating protein *(RabGAP4) & original... 0.02 OrthoFinder output from all 47 species
Pir_g10764 No alias Rab GTPase-activating protein *(RabGAP4) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g03729 No alias Rab GTPase-activating protein *(RabGAP4) & original... 0.03 OrthoFinder output from all 47 species
Tin_g02676 No alias Rab GTPase-activaTing protein *(RabGAP4) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e023599_P001 Zm00001e023599 RAB-GTPase-activating protein (RAB-GAP) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008373 sialyltransferase activity IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
CC GO:0030906 retromer, cargo-selective complex IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR000195 Rab-GTPase-TBC_dom 154 399
No external refs found!