Solyc10g086020.3.1 (Solyc10g086020)

Aliases : Solyc10g086020

Description : component RPS23 of SSU proteome

Gene families : OG0002074 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002074_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc10g086020.3.1
Cluster	HCCA: Cluster_135

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00058p00204160	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.19	OrthoFinder output from all 47 species
AT3G09680	No alias	Ribosomal protein S12/S23 family protein	0.03	OrthoFinder output from all 47 species
AT5G02960	No alias	Ribosomal protein S12/S23 family protein	0.47	OrthoFinder output from all 47 species
Adi_g018843	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Adi_g052909	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Adi_g052910	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Adi_g087932	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Aev_g03591	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ala_g11128	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Als_g08953	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Als_g08954	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aob_g02579	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Aop_g02373	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Aspi01Gene08506.t1	Aspi01Gene08506	component *(uS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Azfi_s4142.g118106	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Cba_g38135	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cba_g66593	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.07G004900.1	Ceric.07G004900	component *(uS12) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Ceric.19G078000.1	Ceric.19G078000	component *(uS12) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001264.27	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.26	OrthoFinder output from all 47 species
Cre12.g504200	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.34	OrthoFinder output from all 47 species
Dcu_g04209	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Dde_g04702	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ehy_g01986	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ehy_g08120	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01016341001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.24	OrthoFinder output from all 47 species
GSVIVT01025120001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.3	OrthoFinder output from all 47 species
GSVIVT01025626001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.16	OrthoFinder output from all 47 species
Gb_02361	No alias	component RPS23 of SSU proteome	0.23	OrthoFinder output from all 47 species
Gb_36570	No alias	component RPS23 of SSU proteome	0.23	OrthoFinder output from all 47 species
LOC_Os01g61814.1	iew/438423" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/438423">Len_g16039LOC_Os01g61814	component RPS23 of SSU proteome	0.34	OrthoFinder output from all 47 species
LOC_Os03g60400.1	LOC_Os03g60400	component RPS23 of SSU proteome	0.36	OrthoFinder output from all 47 species
Len_g03598	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Len_g17887	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.14	OrthoFinder output from all 47 species
Len_g18390	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g14177	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
MA_10436470g0020	No alias	component RPS23 of SSU proteome	0.29	OrthoFinder output from all 47 species
MA_19871g0020	No alias	component RPS23 of SSU proteome	0.15	OrthoFinder output from all 47 species
MA_9043057g0010	No alias	component RPS23 of SSU proteome	0.15	OrthoFinder output from all 47 species
Mp2g08680.1	No alias	component RPS23 of SSU proteome	0.53	OrthoFinder output from all 47 species
Msp_g12711	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Msp_g40932	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Pir_g06535	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Pir_g23080	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pp3c11_11070V3.1	Pp3c11_11070	Ribosomal protein S12/S23 family protein	0.13	OrthoFinder output from all 47 species
Pp3c4_3120V3.1	Pp3c4_3120	Ribosomal protein S12/S23 family protein	0.17	OrthoFinder output from all 47 species
Pp3c7_14200V3.1	Pp3c7_14200	Ribosomal protein S12/S23 family protein	0.18	OrthoFinder output from all 47 species
Ppi_g24973	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006034	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0048.g013622	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g15614	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Sam_g19536	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Sam_g19537	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Sam_g23987	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.23	OrthoFinder output from all 47 species
Smo145246	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.12	OrthoFinder output from all 47 species
Tin_g03594	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.18	OrthoFinder output from all 47 species
Tin_g26329	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.25	OrthoFinder output from all 47 species
Tin_g43150	No alias	component *(uS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Zm00001e006170_P001	Zm00001e006170	component RPS23 of SSU proteome	0.37	OrthoFinder output from all 47 species
Zm00001e011770_P001	Zm00001e011770	component RPS23 of SSU proteome	0.14	OrthoFinder output from all 47 species
Zm00001e019377_P001	Zm00001e019377	component RPS23 of SSU proteome	0.37	OrthoFinder output from all 47 species
Zm00001e027265_P001	Zm00001e027265	component RPS23 of SSU proteome	0.23	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006032	Ribosomal_S12/S23	31	141

External Links

No external refs found!

Solyc10g086020.3.1 (Solyc10g086020)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation