Solyc10g084050.2.1 (Solyc10g084050)

Aliases : Solyc10g084050

Description : platform ATPase (CDC48)

Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc10g084050.2.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00085p00052820	CDC48A, CDC48,...	Cell division cycle protein 48 homolog OS=Glycine max	0.03	OrthoFinder output from all 47 species
AT3G53230	No alias	ATPase, AAA-type, CDC48 protein	0.03	OrthoFinder output from all 47 species
AT5G03340	No alias	ATPase, AAA-type, CDC48 protein	0.03	OrthoFinder output from all 47 species
Adi_g080378	CDC48A, CDC48, ATCDC48	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g20264	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g23788	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g37022	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g32077	CIP111	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.02G031700.1	Ceric.02G031700	platform ATPase CDC48 & original description:...	0.03	OrthoFinder output from all 47 species
Cre06.g269950	No alias	Cell division control protein 48 homolog E...	0.02	OrthoFinder output from all 47 species
Dcu_g10601	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01025723001	No alias	Cell division control protein 48 homolog D...	0.04	OrthoFinder output from all 47 species
GSVIVT01025783001	CIP111	Calmodulin-interacting protein 111 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
MA_10429450g0010	No alias	Cell division control protein 48 homolog D...	0.02	OrthoFinder output from all 47 species
MA_179420g0010	emb1354, CDC48C	Cell division control protein 48 homolog C...	0.06	OrthoFinder output from all 47 species
Mp1g02450.1	No alias	platform ATPase (CDC48)	0.05	OrthoFinder output from all 47 species
Nbi_g13202	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g03860	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g63146	CIP111	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g22537	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e012761_P001	Zm00001e012761	platform ATPase (CDC48)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	HCCA
BP	GO:0017003	protein-heme linkage	IEP	HCCA
BP	GO:0017004	cytochrome complex assembly	IEP	HCCA
BP	GO:0017006	protein-tetrapyrrole linkage	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	245	374
IPR003959	ATPase_AAA_core	518	651
IPR003338	CDC4_N-term_subdom	30	111
IPR004201	Cdc48_dom2	132	194
IPR015415	Vps4_C	732	764
IPR041569	AAA_lid_3	673	714
IPR041569	AAA_lid_3	398	438

External Links

No external refs found!

Solyc10g084050.2.1 (Solyc10g084050)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation