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  5. Solyc10g083780.1.1

Solyc10g083780.1.1 (VPS37-1, Solyc10g083780)


Aliases : VPS37-1, Solyc10g083780

Description : component VPS37 of ESCRT-I complex


Gene families : OG0002321 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002321_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g083780.1.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
Aob_g01015 No alias component *(VPS37) of ESCRT-I complex & original... 0.02 OrthoFinder output from all 47 species
Aob_g09305 VPS37-1 component *(VPS37) of ESCRT-I complex & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020675.80 VPS37-1 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.02 OrthoFinder output from all 47 species
LOC_Os03g08770.1 VPS37-1, LOC_Os03g08770 component VPS37 of ESCRT-I complex 0.04 OrthoFinder output from all 47 species
Spa_g10669 VPS37-1 component *(VPS37) of ESCRT-I complex & original... 0.02 OrthoFinder output from all 47 species
Spa_g18486 No alias component *(VPS37) of ESCRT-I complex & original... 0.03 OrthoFinder output from all 47 species
Zm00001e000639_P002 VPS37-1, Zm00001e000639 component VPS37 of ESCRT-I complex 0.03 OrthoFinder output from all 47 species
Zm00001e038844_P006 VPS37-1, Zm00001e038844 component VPS37 of ESCRT-I complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005758 mitochondrial intermembrane space IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006825 copper ion transport IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016530 metallochaperone activity IEP HCCA
MF GO:0016531 copper chaperone activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0031970 organelle envelope lumen IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
InterPro domains Description Start Stop
IPR009851 Mod_r 78 221
No external refs found!