LOC_Os11g29380 (Os11g0484300)

Aliases : Os11g0484300

Description : 28.1 DNA.synthesis/chromatin structure Encodes MCM2 (MINICHROMOSOME MAINTENANCE 2), a protein essential to embryo development. Overexpression results in altered root meristem function. MINICHROMOSOME MAINTENANCE 2 (MCM2)

Gene families : OG_01_0005111 (Gene family) Phylogenetic Tree(s): OG0005111_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): LOC_Os11g29380
Cluster	HCCA cluster: Cluster_78

Target	Alias	Description	ECC score	Gene Family Method
AT1G44900	MCM2, ATMCM2	minichromosome maintenance (MCM2/3/5) family protein	0.19	Gene family
Cpa\|evm.model.tig00020554.77	No alias	28.1 DNA.synthesis/chromatin structure Encodes MCM2...	0.04	Gene family
Cre07.g338000	No alias	28.1 DNA.synthesis/chromatin structure Encodes MCM2...	0.08	Gene family
GSVIVT01001119001	No alias	28.1 DNA.synthesis/chromatin structure Encodes MCM2...	0.1	Gene family
MA_10431703g0010	No alias	28.1 DNA.synthesis/chromatin structure Encodes MCM2...	0.1	Gene family
Smo88537	PACid_15407070	28.1 DNA.synthesis/chromatin structure Encodes MCM2...	0.03	Gene family
Solyc11g040120.2.1	Solyc11g040120.2	28.1 DNA.synthesis/chromatin structure Encodes MCM2...	0.11	Gene family
Zm00001d049190	GRMZM2G139894	28.1 DNA.synthesis/chromatin structure Encodes MCM2...	0.15	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006270	DNA replication initiation	IEA	InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR008045	MCM2	49	221
IPR033762	MCM_OB	344	471
IPR027925	MCM_N	245	338
IPR001208	MCM_dom	512	734

External Links

No external refs found!

LOC_Os11g29380 (Os11g0484300)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation