Solyc10g081210.3.1 (Solyc10g081210)

Aliases : Solyc10g081210

Description : component RPA3 of single-stranded-DNA binding RPA complex. component RPA3 of RPA presynaptic filament assembly factor complex

Gene families : OG0005363 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005363_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc10g081210.3.1

Target	Alias	Description	ECC score	Gene Family Method
AT3G52630	No alias	Nucleic acid-binding, OB-fold-like protein	0.02	OrthoFinder output from all 47 species
Ceric.21G026100.1	Ceric.21G026100	component *(RPA3) of RPA presynaptic filament assembly...	0.02	OrthoFinder output from all 47 species
Dde_g04150	No alias	component *(RPA3) of RPA presynaptic filament assembly...	0.02	OrthoFinder output from all 47 species
LOC_Os01g14980.1	LOC_Os01g14980	component RPA3 of single-stranded-DNA binding RPA...	0.02	OrthoFinder output from all 47 species
MA_10430633g0010	No alias	component RPA3 of single-stranded-DNA binding RPA...	0.05	OrthoFinder output from all 47 species
Mp8g07790.1	No alias	component RPA3 of single-stranded-DNA binding RPA...	0.03	OrthoFinder output from all 47 species
Ore_g41981	No alias	component *(RPA3) of RPA presynaptic filament assembly...	0.14	OrthoFinder output from all 47 species
Spa_g18698	No alias	component *(RPA3) of RPA presynaptic filament assembly...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006310	DNA recombination	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR013970	Rfa2	2	82

External Links

No external refs found!

Solyc10g081210.3.1 (Solyc10g081210)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation