1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc10g080930.2.1

Solyc10g080930.2.1 (Solyc10g080930)


Aliases : Solyc10g080930

Description : component MED26 of MEDIATOR transcription co-activator complex


Gene families : OG0000390 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000390_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g080930.2.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g012316 No alias component *(MED26) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Adi_g056472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g056500 No alias component *(MED26) of MEDIATOR transcription... 0.04 OrthoFinder output from all 47 species
Adi_g085832 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g113666 No alias component *(MED26) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Adi_g125956 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g26262 No alias component *(MED26) of MEDIATOR transcription... 0.04 OrthoFinder output from all 47 species
Aspi01Gene07207.t1 Aspi01Gene07207 component *(MED26) of MEDIATOR transcription... 0.04 OrthoFinder output from all 47 species
Aspi01Gene69253.t1 Aspi01Gene69253 component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Ceric.30G069800.1 Ceric.30G069800 not classified & original description: pacid=50608596... 0.02 OrthoFinder output from all 47 species
Ceric.31G055300.1 Ceric.31G055300 not classified & original description: pacid=50574382... 0.03 OrthoFinder output from all 47 species
Dac_g15449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g16415 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01025776001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
Nbi_g27629 No alias component *(MED26) of MEDIATOR transcription... 0.04 OrthoFinder output from all 47 species
Pir_g59707 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Ppi_g17469 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003699 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005713 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008019 No alias not classified & original description: CDS=1-1290 0.03 OrthoFinder output from all 47 species
Smo404483 No alias Probable mediator of RNA polymerase II transcription... 0.02 OrthoFinder output from all 47 species
Solyc10g078350.2.1 Solyc10g078350 component MED26 of MEDIATOR transcription co-activator complex 0.03 OrthoFinder output from all 47 species
Zm00001e010865_P001 Zm00001e010865 component MED26 of MEDIATOR transcription co-activator complex 0.04 OrthoFinder output from all 47 species
Zm00001e027059_P003 Zm00001e027059 component MED26 of MEDIATOR transcription co-activator complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR017923 TFIIS_N 155 203
No external refs found!