1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc10g079680.3.1

Solyc10g079680.3.1 (ORG2, BHLH038, Solyc10g079680)


Aliases : ORG2, BHLH038, Solyc10g079680

Description : transcription factor (bHLH). iron/copper homeostasis regulator. bHLH-Ib iron/copper homeostasis regulator


Gene families : OG0002401 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002401_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g079680.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00269160 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
AMTR_s00032p00045230 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
AT1G10585 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G12540 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G62975 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.06 OrthoFinder output from all 47 species
AT4G25400 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.01 OrthoFinder output from all 47 species
AT4G25410 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G51780 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
GSVIVT01018461001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.09 OrthoFinder output from all 47 species
GSVIVT01020561001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01027323001 ORG2, BHLH038 Nutrient uptake.copper uptake.regulation.bHLH-Ib... 0.03 OrthoFinder output from all 47 species
GSVIVT01034621001 ORG2, BHLH038 Nutrient uptake.copper uptake.regulation.bHLH-Ib... 0.02 OrthoFinder output from all 47 species
Gb_26737 No alias transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
MA_14352g0010 No alias transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
MA_14544g0010 No alias transcription factor (bHLH) 0.01 OrthoFinder output from all 47 species
MA_938775g0010 No alias transcription factor (bHLH) 0.01 OrthoFinder output from all 47 species
Pir_g39777 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g47256 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g50631 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g078130.3.1 Solyc02g078130 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Solyc03g114230.2.1 Solyc03g114230 Transcription factor bHLH162 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc03g114237.1.1 Solyc03g114237 transcription factor (bHLH) 0.01 OrthoFinder output from all 47 species
Zm00001e017129_P001 Zm00001e017129 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e018588_P001 BHLH100, Zm00001e018588 transcription factor (bHLH). iron/copper homeostasis... 0.02 OrthoFinder output from all 47 species
Zm00001e028309_P001 ORG3, BHLH039,... transcription factor (bHLH). iron/copper homeostasis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011598 bHLH_dom 3 57
No external refs found!