Solyc10g079510.3.1 (Solyc10g079510)

Aliases : Solyc10g079510

Description : Regulator of telomere elongation helicase 1 homolog OS=Arabidopsis thaliana (sp|f4hqe2|rtel1_arath : 390.0)

Gene families : OG0002453 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002453_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc10g079510.3.1
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00044p00154010	evm_27.TU.AmTr_v1...	Regulator of telomere elongation helicase 1 homolog...	0.02	OrthoFinder output from all 47 species
AMTR_s00078p00189390	evm_27.TU.AmTr_v1...	Regulator of telomere elongation helicase 1 homolog...	0.04	OrthoFinder output from all 47 species
AT1G20720	No alias	RAD3-like DNA-binding helicase protein	0.18	OrthoFinder output from all 47 species
Als_g10918	No alias	regulatory helicase *(RTEL) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g18157	No alias	regulatory helicase *(RTEL) & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0083.g038884	No alias	dsDNA helicase *(FANCJ) & original description: CDS=38-3979	0.03	OrthoFinder output from all 47 species
Ceric.16G032600.1	Ceric.16G032600	dsDNA helicase *(FANCJ) & original description:...	0.13	OrthoFinder output from all 47 species
Ceric.20G041000.1	Ceric.20G041000	regulatory helicase *(RTEL) & original description:...	0.07	OrthoFinder output from all 47 species
Cre02.g089608	No alias	Regulator of telomere elongation helicase 1 homolog...	0.06	OrthoFinder output from all 47 species
Cre09.g397350	No alias	Regulator of telomere elongation helicase 1 homolog...	0.05	OrthoFinder output from all 47 species
GSVIVT01013389001	No alias	Regulator of telomere elongation helicase 1 homolog...	0.22	OrthoFinder output from all 47 species
GSVIVT01017107001	No alias	No description available	0.05	OrthoFinder output from all 47 species
GSVIVT01017108001	No alias	Regulator of telomere elongation helicase 1 homolog...	0.07	OrthoFinder output from all 47 species
Gb_04351	No alias	Regulator of telomere elongation helicase 1 homolog...	0.03	OrthoFinder output from all 47 species
Gb_36663	No alias	Regulator of telomere elongation helicase 1 homolog...	0.19	OrthoFinder output from all 47 species
Gb_36664	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os01g40980.1	LOC_Os01g40980	Regulator of telomere elongation helicase 1 homolog...	0.02	OrthoFinder output from all 47 species
LOC_Os09g37920.1	LOC_Os09g37920	Regulator of telomere elongation helicase 1 homolog...	0.05	OrthoFinder output from all 47 species
Len_g08849	No alias	regulatory helicase *(RTEL) & original description: none	0.02	OrthoFinder output from all 47 species
MA_10436237g0010	No alias	Regulator of telomere elongation helicase 1 homolog...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002634	No alias	subunit c of V-type ATPase membrane V0 subcomplex &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0045.g013303	No alias	not classified & original description: CDS=8-1192	0.02	OrthoFinder output from all 47 species
Smo408754	No alias	Regulator of telomere elongation helicase 1 homolog...	0.03	OrthoFinder output from all 47 species
Tin_g31760	No alias	regulatory helicase *(RTEL) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e034917_P001	Zm00001e034917	Regulator of telomere elongation helicase 1 homolog...	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003678	DNA helicase activity	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010614	DEAD_2	154	316
IPR006555	ATP-dep_Helicase_C	556	766

External Links

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Solyc10g079510.3.1 (Solyc10g079510)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation