LOC_Os03g56960.1


Description : Pentatricopeptide repeat-containing protein At5g14080 OS=Arabidopsis thaliana (sp|q9fmu2|pp380_arath : 377.0)


Gene families : OG_01_0008070 (Archaeplastida) Phylogenetic Tree(s): OG_01_0008070_tree ,
OG_02_0006659 (LandPlants) Phylogenetic Tree(s): OG_02_0006659_tree ,
OG_03_0004717 (SeedPlants) Phylogenetic Tree(s): OG_03_0004717_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g56960.1
Cluster HCCA: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01033052001 No alias Pentatricopeptide repeat-containing protein At5g14080... 0.03 Archaeplastida
Gb_33452 No alias Pentatricopeptide repeat-containing protein At5g14080... 0.03 Archaeplastida
MA_845827g0010 No alias Pentatricopeptide repeat-containing protein At1g06710,... 0.04 Archaeplastida
Solyc02g094310.3.1 No alias Pentatricopeptide repeat-containing protein At5g14080... 0.03 Archaeplastida
Zm00001e009197_P002 No alias Pentatricopeptide repeat-containing protein At5g14080... 0.04 Archaeplastida
GSVIVT01033052001 No alias Pentatricopeptide repeat-containing protein At5g14080... 0.05 LandPlants
Gb_33452 No alias Pentatricopeptide repeat-containing protein At5g14080... 0.02 LandPlants
MA_845827g0010 No alias Pentatricopeptide repeat-containing protein At1g06710,... 0.04 LandPlants
Solyc02g094310.3.1 No alias Pentatricopeptide repeat-containing protein At5g14080... 0.02 LandPlants
Zm00001e009197_P002 No alias Pentatricopeptide repeat-containing protein At5g14080... 0.04 LandPlants
GSVIVT01033052001 No alias Pentatricopeptide repeat-containing protein At5g14080... 0.03 SeedPlants
Gb_33452 No alias Pentatricopeptide repeat-containing protein At5g14080... 0.02 SeedPlants
Gb_33603 No alias Pentatricopeptide repeat-containing protein At1g12775,... 0.03 SeedPlants
Solyc02g094310.3.1 No alias Pentatricopeptide repeat-containing protein At5g14080... 0.02 SeedPlants
Zm00001e009197_P002 No alias Pentatricopeptide repeat-containing protein At5g14080... 0.04 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 393 441
IPR002885 Pentatricopeptide_repeat 363 390
IPR002885 Pentatricopeptide_repeat 194 214
IPR002885 Pentatricopeptide_repeat 118 144
IPR002885 Pentatricopeptide_repeat 459 489
No external refs found!