Solyc10g055640.2.1 (Solyc10g055640)


Aliases : Solyc10g055640

Description : component SYF2 of non-snRNP MOS4-associated complex


Gene families : OG0003956 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003956_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g055640.2.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AT2G16860 No alias GCIP-interacting family protein 0.06 OrthoFinder output from all 47 species
Adi_g026008 No alias component *(SYF2) of MAC spliceosome-associated complex... 0.02 OrthoFinder output from all 47 species
Aob_g10008 No alias component *(SYF2) of MAC spliceosome-associated complex... 0.04 OrthoFinder output from all 47 species
Aspi01Gene24062.t1 Aspi01Gene24062 component *(SYF2) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
Azfi_s0098.g043901 No alias component *(SYF2) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
Ceric.14G017200.1 Ceric.14G017200 component *(SYF2) of MAC spliceosome-associated complex... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020693.8 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Cre01.g037400 No alias Protein modification.protein folding and quality... 0.02 OrthoFinder output from all 47 species
GSVIVT01024009001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Gb_07136 No alias component SYF2 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from all 47 species
LOC_Os06g49740.1 LOC_Os06g49740 component SYF2 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species
Msp_g08490 No alias component *(SYF2) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
Pnu_g07421 No alias component *(SYF2) of MAC spliceosome-associated complex... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0032784 regulation of DNA-templated transcription elongation IEP HCCA
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP HCCA
BP GO:0032968 positive regulation of transcription elongation by RNA polymerase II IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034243 regulation of transcription elongation by RNA polymerase II IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR013260 mRNA_splic_SYF2 156 303
No external refs found!