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  5. Solyc10g049710.2.1

Solyc10g049710.2.1 (CLPR1, SVR2, NCLPP5,...)


Aliases : CLPR1, SVR2, NCLPP5, Solyc10g049710

Description : non-proteolytic core component ClpR of chloroplast Clp-type protease complex


Gene families : OG0000988 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000988_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g049710.2.1
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00164p00068000 CLPR1, SVR2,... Protein degradation.peptidase families.serine-type... 0.06 OrthoFinder output from all 47 species
AT1G09130 No alias ATP-dependent caseinolytic (Clp) protease/crotonase... 0.05 OrthoFinder output from all 47 species
AT1G49970 CLPR1, SVR2, NCLPP5 CLP protease proteolytic subunit 1 0.08 OrthoFinder output from all 47 species
AT4G17040 CLPR4 CLP protease R subunit 4 0.05 OrthoFinder output from all 47 species
Adi_g019566 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.05 OrthoFinder output from all 47 species
Adi_g052191 CLPR4 non-proteolytic core component *(ClpR) of chloroplast... 0.02 OrthoFinder output from all 47 species
Adi_g074670 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Aev_g07767 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Ala_g09550 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Aob_g01289 CLPR4 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Aob_g02995 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Aop_g23397 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.02 OrthoFinder output from all 47 species
Cba_g08836 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.02 OrthoFinder output from all 47 species
Cba_g15422 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.02 OrthoFinder output from all 47 species
Cba_g25400 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020952.49 CLPR4 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder output from all 47 species
Cre03.g204350 CLPR4 Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder output from all 47 species
Cre07.g331500 No alias Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder output from all 47 species
Cre14.g619100 CLPR1, SVR2, NCLPP5 Protein degradation.peptidase families.serine-type... 0.04 OrthoFinder output from all 47 species
Dac_g10911 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Dcu_g02591 CLPR4 non-proteolytic core component *(ClpR) of chloroplast... 0.06 OrthoFinder output from all 47 species
Dcu_g11508 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.05 OrthoFinder output from all 47 species
Dde_g02711 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.05 OrthoFinder output from all 47 species
Dde_g21817 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Ehy_g01031 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Ehy_g18668 CLPR4 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
GSVIVT01031146001 No alias Protein degradation.peptidase families.serine-type... 0.06 OrthoFinder output from all 47 species
GSVIVT01037850001 CLPR1, SVR2, NCLPP5 Protein degradation.peptidase families.serine-type... 0.05 OrthoFinder output from all 47 species
Gb_12676 No alias non-proteolytic core component ClpR of chloroplast... 0.05 OrthoFinder output from all 47 species
Gb_40312 CLPR4 non-proteolytic core component ClpR of chloroplast... 0.02 OrthoFinder output from all 47 species
LOC_Os03g22430.1 LOC_Os03g22430 non-proteolytic core component ClpR of chloroplast... 0.04 OrthoFinder output from all 47 species
Lfl_g01084 CLPR4 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Lfl_g01473 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
MA_10429819g0020 CLPR1, SVR2, NCLPP5 non-proteolytic core component ClpR of chloroplast... 0.05 OrthoFinder output from all 47 species
MA_6114g0010 No alias ATP-dependent Clp protease proteolytic subunit-related... 0.03 OrthoFinder output from all 47 species
MA_8898851g0010 CLPR1, SVR2, NCLPP5 non-proteolytic core component ClpR of chloroplast... 0.03 OrthoFinder output from all 47 species
Mp6g21300.1 No alias non-proteolytic core component ClpR of chloroplast... 0.03 OrthoFinder output from all 47 species
Mp7g03170.1 CLPR4 non-proteolytic core component ClpR of chloroplast... 0.03 OrthoFinder output from all 47 species
Msp_g05047 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.05 OrthoFinder output from all 47 species
Nbi_g05257 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Nbi_g11210 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Ore_g07323 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Pir_g00915 CLPR4 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Pir_g12837 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.05 OrthoFinder output from all 47 species
Pnu_g07357 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003581 CLPR4 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Sam_g11367 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Sam_g16208 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.02 OrthoFinder output from all 47 species
Sam_g17177 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Sam_g52083 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Smo153292 No alias Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder output from all 47 species
Spa_g12805 CLPR4 non-proteolytic core component *(ClpR) of chloroplast... 0.06 OrthoFinder output from all 47 species
Spa_g55823 CLPR4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e017288_P001 CLPR4, Zm00001e017288 non-proteolytic core component ClpR of chloroplast... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045454 cell redox homeostasis IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR023562 ClpP/TepA 171 352
No external refs found!