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  5. Solyc10g049570.3.1

Solyc10g049570.3.1 (Solyc10g049570)


Aliases : Solyc10g049570

Description : Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana (sp|q0wp85|pp150_arath : 625.0)


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g049570.3.1

Target Alias Description ECC score Gene Family Method Actions
AT1G52640 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G49730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g25883 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene59816.t1 EMB2261, Aspi01Gene59816 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_05336 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_08432 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.03 OrthoFinder output from all 47 species
Gb_12874 No alias Pentatricopeptide repeat-containing protein At3g61360... 0.05 OrthoFinder output from all 47 species
Gb_20376 No alias group-II intron mitochondrial splicing factor (MISF68) 0.05 OrthoFinder output from all 47 species
Gb_20750 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.05 OrthoFinder output from all 47 species
Gb_21593 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.06 OrthoFinder output from all 47 species
Gb_22860 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.05 OrthoFinder output from all 47 species
Gb_23459 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.04 OrthoFinder output from all 47 species
Gb_41835 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.04 OrthoFinder output from all 47 species
MA_10139g0010 No alias Pentatricopeptide repeat-containing protein At3g60050... 0.03 OrthoFinder output from all 47 species
MA_10432868g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_128052g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.03 OrthoFinder output from all 47 species
MA_7909g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_845827g0010 No alias Pentatricopeptide repeat-containing protein At1g06710,... 0.03 OrthoFinder output from all 47 species
MA_86400g0010 No alias Pentatricopeptide repeat-containing protein At5g18390,... 0.03 OrthoFinder output from all 47 species
Zm00001e005446_P003 Zm00001e005446 group-II intron mitochondrial splicing factor (MISF68) 0.05 OrthoFinder output from all 47 species
Zm00001e013118_P001 Zm00001e013118 Pentatricopeptide repeat-containing protein At3g61360... 0.04 OrthoFinder output from all 47 species
Zm00001e025816_P001 Zm00001e025816 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e026896_P001 Zm00001e026896 Pentatricopeptide repeat-containing protein At3g62470,... 0.03 OrthoFinder output from all 47 species
Zm00001e036197_P001 Zm00001e036197 Pentatricopeptide repeat-containing protein At1g71060,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 331 378
IPR002885 Pentatricopeptide_repeat 109 154
IPR002885 Pentatricopeptide_repeat 402 450
IPR002885 Pentatricopeptide_repeat 220 265
IPR002885 Pentatricopeptide_repeat 279 308
No external refs found!