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  5. Solyc10g045540.2.1

Solyc10g045540.2.1 (TPR5, Solyc10g045540)


Aliases : TPR5, Solyc10g045540

Description : RPAP3 polymerase-II assembly factor


Gene families : OG0003637 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003637_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g045540.2.1

Target Alias Description ECC score Gene Family Method Actions
Aop_g05129 TPR5 polymerase-II assembly factor *(RPAP3) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g48721 TPR5 polymerase-II assembly factor *(RPAP3) & original... 0.04 OrthoFinder output from all 47 species
Lfl_g01604 TPR5 polymerase-II assembly factor *(RPAP3) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP HCCA
MF GO:0004592 pantoate-beta-alanine ligase activity IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0015939 pantothenate metabolic process IEP HCCA
BP GO:0015940 pantothenate biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0019905 syntaxin binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR019734 TPR_repeat 142 170
IPR001440 TPR_1 111 139
IPR025986 RPAP3-like_C 348 437
No external refs found!