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  5. Solyc10g044450.3.1

Solyc10g044450.3.1 (ATUPF3, UPF3, Solyc10g044450)


Aliases : ATUPF3, UPF3, Solyc10g044450

Description : component UPF3 of RNA quality control Exon Junction complex


Gene families : OG0002175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002175_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g044450.3.1

Target Alias Description ECC score Gene Family Method Actions
AT1G33980 ATUPF3, UPF3 Smg-4/UPF3 family protein 0.03 OrthoFinder output from all 47 species
Adi_g019348 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Adi_g074753 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Aob_g35424 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Cba_g38478 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Ceric.34G019900.1 ATUPF3, UPF3,... component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020572.59 ATUPF3, UPF3 RNA processing.RNA quality control Exon Junction complex... 0.01 OrthoFinder output from all 47 species
Cre12.g488100 ATUPF3, UPF3 RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
GSVIVT01023232001 ATUPF3, UPF3 RNA processing.RNA quality control Exon Junction complex... 0.04 OrthoFinder output from all 47 species
LOC_Os04g35920.2 ATUPF3, UPF3,... component UPF3 of RNA quality control Exon Junction complex 0.06 OrthoFinder output from all 47 species
Lfl_g04941 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ppi_g54665 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Spa_g17421 No alias component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Zm00001e008047_P001 ATUPF3, UPF3,... component UPF3 of RNA quality control Exon Junction complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005120 UPF3_dom 4 166
No external refs found!