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  5. Solyc10g018390.3.1

Solyc10g018390.3.1 (Solyc10g018390)


Aliases : Solyc10g018390

Description : Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen lyase(50.4.2 : 539.2) & Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata (sp|o50046|trpb_camac : 513.0)


Gene families : OG0002978 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002978_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g018390.3.1
Cluster HCCA: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
AT5G28237 No alias Pyridoxal-5'-phosphate-dependent enzyme family protein 0.04 OrthoFinder output from all 47 species
Aop_g69298 TSB2 EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01012644001 No alias Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.07 OrthoFinder output from all 47 species
LOC_Os08g04180.1 TSB2, LOC_Os08g04180 subunit beta of tryptophan synthase complex 0.04 OrthoFinder output from all 47 species
Mp4g12300.1 TRP2, TSB1, ATTSB1, TRPB subunit beta of tryptophan synthase complex 0.03 OrthoFinder output from all 47 species
Msp_g42922 TRP2, TSB1, ATTSB1, TRPB EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g09773 TRP2, TSB1, ATTSB1, TRPB EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g45170 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc10g005320.3.1 Solyc10g005320 Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.03 OrthoFinder output from all 47 species
Spa_g14905 TRP2, TSB1, ATTSB1, TRPB EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0016229 steroid dehydrogenase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR001926 TrpB-like_PALP 110 438
No external refs found!