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  5. Solyc10g017640.1.1

Solyc10g017640.1.1 (GL19, AGL19, Solyc10g017640)


Aliases : GL19, AGL19, Solyc10g017640

Description : transcription factor (MADS/AGL)


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g017640.1.1
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00103080 AGL9, SEP3,... RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
AT2G14210 ANR1, AGL44 AGAMOUS-like 44 0.03 OrthoFinder output from all 47 species
Adi_g082624 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g38807 AGL91 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02975 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29409 AGL6 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07314 AGL21 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g08748 AGL9, SEP3 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25491 AGL8, FUL MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01027577001 AGL6 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
Len_g52703 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g13029 AGL21 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_18048g0010 AGL21 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_3200737g0010 AGL24 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_45349g0010 AGL9, SEP3 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_75656g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_8636733g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
MA_9544285g0010 AGL42 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g08479 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g43916 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g28969 AGL104 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g60433 AGL21 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g62574 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g47836 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc10g080030.2.1 AGL18, Solyc10g080030 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc11g010570.2.1 SVP, AGL22,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e011565_P001 AGL7, AP1, Zm00001e011565 MADS-box transcription factor 15 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
Zm00001e015924_P003 SVP, AGL22,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e018811_P001 AGL14, Zm00001e018811 transcription factor (MADS/AGL) 0.07 OrthoFinder output from all 47 species
Zm00001e023825_P002 SVP, AGL22,... transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
Zm00001e033123_P001 AGL32, TT16,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e035509_P002 AGL7, AP1, Zm00001e035509 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e038096_P002 SOC1, AGL20,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!