LOC_Os11g26160 (Os11g0448400)


Aliases : Os11g0448400

Description : 27.3.85 RNA.regulation of transcription.sigma like plant Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light. RNApolymerase sigma subunit 2 (SIG2)


Gene families : OG_01_0001192 (Gene family) Phylogenetic Tree(s): OG0001192_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os11g26160
Cluster HCCA cluster: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AT1G08540 ATSIG1, SIGB,... RNApolymerase sigma subunit 2 0.17 Gene family
AT2G36990 SIGF, SIG6,... RNApolymerase sigma-subunit F 0.15 Gene family
AT5G13730 SIGD, SIG4 sigma factor 4 0.02 Gene family
Cpa|evm.model.tig00000842.1 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
GSVIVT01019326001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.09 Gene family
GSVIVT01025717001 No alias No description available 0.05 Gene family
GSVIVT01035330001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.04 Gene family
MA_10429585g0010 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.05 Gene family
Smo117159 PACid_15403291 27.3.85 RNA.regulation of transcription.sigma like plant... 0.06 Gene family
Solyc01g081490.3.1 Solyc01g081490.3 27.3.85 RNA.regulation of transcription.sigma like plant... 0.15 Gene family
Solyc08g065970.3.1 Solyc08g065970.3 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family
Solyc09g008040.3.1 Solyc09g008040.3 No description available 0.05 Gene family
Zm00001d049160 GRMZM2G143392 27.3.85 RNA.regulation of transcription.sigma like plant... 0.15 Gene family

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan
BP GO:0006352 DNA-templated transcription, initiation IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007624 RNA_pol_sigma70_r3 406 481
IPR007627 RNA_pol_sigma70_r2 328 395
IPR007630 RNA_pol_sigma70_r4 494 546
No external refs found!