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  5. Solyc10g011730.3.1

Solyc10g011730.3.1 (AtAGP20, AGP20, Solyc10g011730)


Aliases : AtAGP20, AGP20, Solyc10g011730

Description : no hits & (original description: none)


Gene families : OG0003275 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003275_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g011730.3.1
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
MA_43692g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ppi_g09113 AtAGP20, AGP20 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001701 ATAGP22, AGP22 not classified & original description: CDS=1-333 0.06 OrthoFinder output from all 47 species
Sam_g31771 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g095515.1.1 AGP16, ATAGP16,... no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g49189 AGP16, ATAGP16 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR009424 AGP16/20/22/41 30 62
No external refs found!