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Aliases : Solyc10g008570
Description : SYP1-group Qa-type SNARE component
Gene families : OG0000392 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000392_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc10g008570.3.1 | |
| Cluster | HCCA: Cluster_94 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G61290 | ATSYP124, SYP124 | syntaxin of plants 124 | 0.04 | OrthoFinder output from all 47 species | |
| AT3G03800 | ATSYP131, SYP131 | syntaxin of plants 131 | 0.05 | OrthoFinder output from all 47 species | |
| Dde_g43398 | ATSYP131, SYP131 | Qa-type SYP1-group component of SNARE membrane fusion... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01006716001 | ATSYP124, SYP124 | Vesicle trafficking.SNARE target membrane recognition... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01030578001 | ATSYP124, SYP124 | Vesicle trafficking.SNARE target membrane recognition... | 0.03 | OrthoFinder output from all 47 species | |
| MA_6119g0010 | ATSYP124, SYP124 | Qa-SNARE component KNOLLE of SNARE cell-plate vesicle... | 0.03 | OrthoFinder output from all 47 species | |
| Mp2g19600.1 | SYP132, ATSYP132 | SYP1-group Qa-type SNARE component | 0.01 | OrthoFinder output from all 47 species | |
| Nbi_g24317 | SYP125, ATSYP125 | Qa-type SYP1-group component of SNARE membrane fusion... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g49029 | No alias | Qa-type SYP1-group component of SNARE membrane fusion... | 0.01 | OrthoFinder output from all 47 species | |
| Solyc07g052470.3.1 | SYP132,... | SYP1-group Qa-type SNARE component | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g55150 | SYP123, ATSYP123 | Qa-type SYP1-group component of SNARE membrane fusion... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0016020 | membrane | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 600 | 626 |
| IPR002885 | Pentatricopeptide_repeat | 768 | 789 |
| IPR002885 | Pentatricopeptide_repeat | 496 | 521 |
| IPR002885 | Pentatricopeptide_repeat | 422 | 470 |
| IPR002885 | Pentatricopeptide_repeat | 694 | 740 |
| IPR002885 | Pentatricopeptide_repeat | 523 | 571 |
| IPR006011 | Syntaxin_N | 41 | 246 |
| IPR000727 | T_SNARE_dom | 248 | 296 |
| No external refs found! |