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  5. Solyc10g007800.3.1

Solyc10g007800.3.1 (PDF1, Solyc10g007800)


Aliases : PDF1, Solyc10g007800

Description : Protodermal factor 1 OS=Arabidopsis thaliana (sp|q9s728|pdf1_arath : 111.0)


Gene families : OG0001043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g007800.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00030870 evm_27.TU.AmTr_v1... No description available 0.01 OrthoFinder output from all 47 species
Als_g00397 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g09555 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g12595 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g16161 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g43905 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g14938 PDF1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_840g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Ppi_g57949 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Smo437656 No alias No description available 0.02 OrthoFinder output from all 47 species
Zm00001e016528_P003 Zm00001e016528 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e030749_P002 Zm00001e030749 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!