1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc10g007480.4.1

Solyc10g007480.4.1 (RHM1, ROL1, ATRHM1,...)


Aliases : RHM1, ROL1, ATRHM1, Solyc10g007480

Description : UDP-L-rhamnose synthase


Gene families : OG0000903 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000903_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g007480.4.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g010835 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g108283 NRS/ER, UER1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g09414 NRS/ER, UER1 dTDP-rhamnose synthase *(NRS-ER) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g01244 NRS/ER, UER1 dTDP-rhamnose synthase *(NRS-ER) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g14366 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000482 NRS/ER, UER1 dTDP-rhamnose synthase *(NRS-ER) & original description:... 0.05 OrthoFinder output from all 47 species
Cba_g13825 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G025600.1 RHM1, ROL1,... UDP-L-rhamnose synthase *(RHM) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.13G016100.1 NRS/ER, UER1,... dTDP-rhamnose synthase *(NRS-ER) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.33G035200.1 NRS/ER, UER1,... dTDP-rhamnose synthase *(NRS-ER) & original description:... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.161 NRS/ER, UER1 Carbohydrate metabolism.nucleotide sugar... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021464.17 ATRHM2, RHM2,... Trifunctional UDP-glucose... 0.03 OrthoFinder output from all 47 species
Cre02.g083800 RHM1, ROL1, ATRHM1 Trifunctional UDP-glucose... 0.08 OrthoFinder output from all 47 species
Cre09.g387171 NRS/ER, UER1 Carbohydrate metabolism.nucleotide sugar... 0.06 OrthoFinder output from all 47 species
Dac_g04561 NRS/ER, UER1 dTDP-rhamnose synthase *(NRS-ER) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014091001 ATRHM3, RHM3 Carbohydrate metabolism.nucleotide sugar... 0.05 OrthoFinder output from all 47 species
Lfl_g04170 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description: none 0.09 OrthoFinder output from all 47 species
Mp1g04880.1 NRS/ER, UER1 UDP-L-rhamnose synthase 0.03 OrthoFinder output from all 47 species
Mp6g02720.1 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase 0.03 OrthoFinder output from all 47 species
Msp_g10007 NRS/ER, UER1 dTDP-rhamnose synthase *(NRS-ER) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05698 NRS/ER, UER1 dTDP-rhamnose synthase *(NRS-ER) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g12352 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g09373 NRS/ER, UER1 dTDP-rhamnose synthase *(NRS-ER) & original description: none 0.06 OrthoFinder output from all 47 species
Pp3c6_15300V3.1 NRS/ER, UER1, Pp3c6_15300 nucleotide-rhamnose synthase/epimerase-reductase 0.01 OrthoFinder output from all 47 species
Ppi_g28967 RHM1, ROL1, ATRHM1 UDP-L-rhamnose synthase *(RHM) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10633 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26377 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo266803 RHM1, ROL1, ATRHM1 Carbohydrate metabolism.nucleotide sugar... 0.04 OrthoFinder output from all 47 species
Tin_g00483 NRS/ER, UER1 dTDP-rhamnose synthase *(NRS-ER) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 10 315
IPR029903 RmlD-like-bd 389 561
No external refs found!