1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc10g006990.3.1

Solyc10g006990.3.1 (Solyc10g006990)


Aliases : Solyc10g006990

Description : poly(A) RNA polymerase (TRF4)


Gene families : OG0001897 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001897_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g006990.3.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g106417 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.02 OrthoFinder output from all 47 species
Aob_g06675 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.02 OrthoFinder output from all 47 species
Aop_g11641 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.02 OrthoFinder output from all 47 species
Aop_g18741 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000944.11 No alias UTP:RNA uridylyltransferase 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre17.g720750 No alias No description available 0.02 OrthoFinder output from all 47 species
LOC_Os01g48210.1 LOC_Os01g48210 poly(A) RNA polymerase (TRF4) 0.05 OrthoFinder output from all 47 species
Lfl_g03072 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.04 OrthoFinder output from all 47 species
Mp3g05650.1 No alias poly(A) RNA polymerase (TRF4) 0.03 OrthoFinder output from all 47 species
Mp6g17640.1 No alias poly(A) RNA polymerase (TRF4) 0.02 OrthoFinder output from all 47 species
Spa_g08208 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002058 PAP_assoc 306 364
IPR002934 Polymerase_NTP_transf_dom 154 238
No external refs found!