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  5. Solyc10g005080.3.1

Solyc10g005080.3.1 (LHY1, LHY, Solyc10g005080)


Aliases : LHY1, LHY, Solyc10g005080

Description : transcription factor (MYB-related). circadian clock core oscillator protein (LHY|CCA1)


Gene families : OG0000435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000435_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g005080.3.1
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272270 LHY1, LHY,... Multi-process regulation.circadian clock.core oscillator... 0.07 OrthoFinder output from all 47 species
AMTR_s00044p00072910 RVE2, CIR1,... RNA biosynthesis.transcriptional activation.MYB... 0.1 OrthoFinder output from all 47 species
AT1G01060 LHY1, LHY Homeodomain-like superfamily protein 0.12 OrthoFinder output from all 47 species
AT2G46830 CCA1 circadian clock associated 1 0.12 OrthoFinder output from all 47 species
AT3G09600 No alias Homeodomain-like superfamily protein 0.1 OrthoFinder output from all 47 species
AT4G01280 No alias Homeodomain-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G17300 RVE1 Homeodomain-like superfamily protein 0.18 OrthoFinder output from all 47 species
Als_g15171 RVE1 circadian clock core oscillator protein *(LHY/CCA1) &... 0.06 OrthoFinder output from all 47 species
Aob_g01863 No alias circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01893.t1 Aspi01Gene01893 transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene31231.t1 RVE2, CIR1,... transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31232.t1 LHY1, LHY,... circadian clock core oscillator protein *(LHY/CCA1) &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene31403.t1 RVE1, Aspi01Gene31403 transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000277 No alias circadian clock factor *(REVEILLE) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0005.g008971 RVE1 transcription factor *(REVEILLE) & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0042.g026930 CCA1 circadian clock core oscillator protein *(LHY/CCA1) &... 0.02 OrthoFinder output from all 47 species
Ceric.04G087900.1 RVE2, CIR1,... transcription factor *(REVEILLE) & original description:... 0.04 OrthoFinder output from all 47 species
Cre12.g514400 RVE2, CIR1 RNA biosynthesis.transcriptional activation.MYB... 0.06 OrthoFinder output from all 47 species
Ehy_g02839 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01026956001 No alias Multi-process regulation.circadian clock.evening element... 0.06 OrthoFinder output from all 47 species
GSVIVT01027456001 CCA1 Multi-process regulation.circadian clock.core oscillator... 0.08 OrthoFinder output from all 47 species
GSVIVT01035231001 RVE1 RNA biosynthesis.transcriptional activation.MYB... 0.12 OrthoFinder output from all 47 species
Gb_25658 RVE1 transcription factor (MYB-related). circadian clock core... 0.04 OrthoFinder output from all 47 species
Gb_28874 LHY1, LHY transcription factor (MYB-related). circadian clock core... 0.05 OrthoFinder output from all 47 species
LOC_Os06g01670.1 LOC_Os06g01670 transcription factor (MYB-related). REVEILLE circadian... 0.06 OrthoFinder output from all 47 species
LOC_Os08g06110.3 LHY1, LHY, LOC_Os08g06110 transcription factor (MYB-related). circadian clock core... 0.06 OrthoFinder output from all 47 species
Len_g19700 RVE1 transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Mp2g14310.1 No alias transcription factor (MYB-related). REVEILLE circadian... 0.04 OrthoFinder output from all 47 species
Msp_g26311 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16812 No alias circadian clock factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g42013 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12578 No alias transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g49740 No alias transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51660 No alias circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Smo166821 No alias Multi-process regulation.circadian clock.core oscillator... 0.04 OrthoFinder output from all 47 species
Smo78045 No alias Multi-process regulation.circadian clock.evening element... 0.05 OrthoFinder output from all 47 species
Spa_g49823 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g38661 No alias circadian clock factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e013333_P002 RVE2, CIR1,... transcription factor (MYB-related) 0.11 OrthoFinder output from all 47 species
Zm00001e021724_P005 LHY1, LHY, Zm00001e021724 transcription factor (MYB-related). circadian clock core... 0.07 OrthoFinder output from all 47 species
Zm00001e023232_P002 Zm00001e023232 transcription factor (MYB-related). REVEILLE circadian... 0.05 OrthoFinder output from all 47 species
Zm00001e040217_P001 LHY1, LHY, Zm00001e040217 circadian clock core oscillator protein (LHY|CCA1) 0.05 OrthoFinder output from all 47 species
Zm00001e041379_P001 RVE1, Zm00001e041379 transcription factor (MYB-related) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 24 67
No external refs found!