Solyc09g092090.4.1 (Solyc09g092090)

Aliases : Solyc09g092090

Description : component mtRPL13 of large ribosomal subunit proteome

Gene families : OG0007032 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007032_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc09g092090.4.1

Target	Alias	Description	ECC score	Gene Family Method
AT3G01790	No alias	Ribosomal protein L13 family protein	0.03	OrthoFinder output from all 47 species
Als_g02209	No alias	component *(uL13m) of large mitoribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Cre09.g405200	No alias	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
GSVIVT01001821001	No alias	Protein biosynthesis.organelle translation...	0.06	OrthoFinder output from all 47 species
Pp3c1_3220V3.1	Pp3c1_3220	Ribosomal protein L13 family protein	0.04	OrthoFinder output from all 47 species
Spa_g10349	No alias	component *(uL13m) of large mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Tin_g08072	No alias	component *(uL13m) of large mitoribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Zm00001e018964_P002	Zm00001e018964	component mtRPL13 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005822	Ribosomal_L13	27	146

External Links

No external refs found!

Solyc09g092090.4.1 (Solyc09g092090)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation