1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc09g091930.3.1

Solyc09g091930.3.1 (UBP2, ATUBP2, Solyc09g091930)


Aliases : UBP2, ATUBP2, Solyc09g091930

Description : deubiquitinase (UBP1-2)


Gene families : OG0003367 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003367_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g091930.3.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g019437 UBP2, ATUBP2 deubiquitinase *(UBP1-2) & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g07996 UBP2, ATUBP2 deubiquitinase *(UBP1-2) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02672 UBP2, ATUBP2 deubiquitinase *(UBP1-2) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.15G074500.1 UBP2, ATUBP2,... deubiquitinase *(UBP1-2) & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g09668 UBP2, ATUBP2 deubiquitinase *(UBP1-2) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01021053001 UBP2, ATUBP2 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os09g32740.1 UBP2, ATUBP2,... deubiquitinase (UBP1-2) 0.04 OrthoFinder output from all 47 species
MA_42270g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_42270g0020 ATUBP1, UBP1 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_609805g0010 UBP2, ATUBP2 deubiquitinase (UBP1-2) 0.09 OrthoFinder output from all 47 species
Mp7g16560.1 UBP2, ATUBP2 deubiquitinase (UBP1-2) 0.04 OrthoFinder output from all 47 species
Pnu_g06472 ATUBP1, UBP1 deubiquitinase *(UBP1-2) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0016579 protein deubiquitination IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR001607 Znf_UBP 74 163
IPR001394 Peptidase_C19_UCH 230 1046
No external refs found!