1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc09g091830.4.1

Solyc09g091830.4.1 (PTAC5, Solyc09g091830)


Aliases : PTAC5, Solyc09g091830

Description : TAC5 cofactor of plastid-encoded RNA polymerase


Gene families : OG0007664 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007664_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g091830.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00113950 PTAC5,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.05 OrthoFinder output from all 47 species
AT4G13670 PTAC5 plastid transcriptionally active 5 0.09 OrthoFinder output from all 47 species
Als_g62119 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021293.9 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g12562 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.03 OrthoFinder output from all 47 species
Dde_g24577 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.04 OrthoFinder output from all 47 species
Ehy_g12076 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01029077001 PTAC5 RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 OrthoFinder output from all 47 species
LOC_Os04g43420.1 PTAC5, LOC_Os04g43420 TAC5 cofactor of plastid-encoded RNA polymerase 0.1 OrthoFinder output from all 47 species
Len_g04276 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.05 OrthoFinder output from all 47 species
Lfl_g15814 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.03 OrthoFinder output from all 47 species
MA_692g0010 PTAC5 TAC5 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Msp_g19386 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.03 OrthoFinder output from all 47 species
Nbi_g38958 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.05 OrthoFinder output from all 47 species
Ore_g08855 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.04 OrthoFinder output from all 47 species
Pir_g60750 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.02 OrthoFinder output from all 47 species
Pp3c19_7640V3.1 PTAC5, Pp3c19_7640 plastid transcriptionally active 5 0.03 OrthoFinder output from all 47 species
Sam_g06443 No alias cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.03 OrthoFinder output from all 47 species
Sam_g51898 No alias cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.02 OrthoFinder output from all 47 species
Smo404832 PTAC5 RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
Spa_g18327 PTAC5 cofactor of plastid-encoded RNA polymerase *(TAC5) &... 0.03 OrthoFinder output from all 47 species
Zm00001e041226_P002 PTAC5, Zm00001e041226 TAC5 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
InterPro domains Description Start Stop
IPR002477 Peptidoglycan-bd-like 194 252
No external refs found!