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  5. Solyc09g091280.4.1

Solyc09g091280.4.1 (RBR, ATRBR1, RBR1,...)


Aliases : RBR, ATRBR1, RBR1, RB1, RB, Solyc09g091280

Description : cell cycle interphase key regulator


Gene families : OG0002400 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002400_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g091280.4.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00239570 RBR, ATRBR1,... Cell cycle.interphase.G1 phase.RB key regulator 0.03 OrthoFinder output from all 47 species
Adi_g111188 RBR, ATRBR1,... regulatory protein (RBR) of cell cycle interphase &... 0.02 OrthoFinder output from all 47 species
Als_g01960 RBR, ATRBR1,... regulatory protein (RBR) of cell cycle interphase &... 0.03 OrthoFinder output from all 47 species
Als_g20749 RBR, ATRBR1,... regulatory protein (RBR) of cell cycle interphase &... 0.03 OrthoFinder output from all 47 species
Aob_g30798 RBR, ATRBR1,... regulatory protein (RBR) of cell cycle interphase &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene66417.t1 RBR, ATRBR1,... regulatory protein (RBR) of cell cycle interphase &... 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g011185 RBR, ATRBR1,... regulatory protein (RBR) of cell cycle interphase &... 0.04 OrthoFinder output from all 47 species
Ceric.12G003800.1 RBR, ATRBR1,... regulatory protein (RBR) of cell cycle interphase &... 0.06 OrthoFinder output from all 47 species
Dcu_g01967 RBR, ATRBR1,... regulatory protein (RBR) of cell cycle interphase &... 0.03 OrthoFinder output from all 47 species
Dde_g02382 RBR, ATRBR1,... regulatory protein (RBR) of cell cycle interphase &... 0.03 OrthoFinder output from all 47 species
GSVIVT01035560001 RBR, ATRBR1,... Cell cycle.interphase.G1 phase.RB key regulator 0.1 OrthoFinder output from all 47 species
LOC_Os11g32900.1 RBR, ATRBR1,... cell cycle interphase key regulator 0.03 OrthoFinder output from all 47 species
Mp8g18830.1 RBR, ATRBR1,... cell cycle interphase key regulator 0.03 OrthoFinder output from all 47 species
Msp_g14075 RBR, ATRBR1,... regulatory protein (RBR) of cell cycle interphase &... 0.04 OrthoFinder output from all 47 species
Nbi_g42458 RBR, ATRBR1,... regulatory protein (RBR) of cell cycle interphase &... 0.02 OrthoFinder output from all 47 species
Ppi_g05934 RBR, ATRBR1,... regulatory protein (RBR) of cell cycle interphase &... 0.03 OrthoFinder output from all 47 species
Zm00001e003716_P001 RBR, ATRBR1,... cell cycle interphase key regulator 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0051726 regulation of cell cycle IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR024599 RB_N 95 233
IPR002720 RB_A 415 616
IPR002719 RB_B 739 867
No external refs found!