Aliases : Solyc09g090740
Description : DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. japonica (sp|a3avh5|rh13_orysj : 763.0)
Gene families : OG0005853 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005853_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Solyc09g090740.4.1 | |
Cluster | HCCA: Cluster_19 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G16840 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.04 | OrthoFinder output from all 47 species | |
Adi_g110755 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aop_g25755 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0123.g048442 | No alias | not classified & original description: CDS=180-2516 | 0.04 | OrthoFinder output from all 47 species | |
Ceric.13G087700.1 | Ceric.13G087700 | not classified & original description: pacid=50636878... | 0.05 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020943.85 | No alias | DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... | 0.06 | OrthoFinder output from all 47 species | |
Cre01.g022350 | No alias | DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis thaliana | 0.15 | OrthoFinder output from all 47 species | |
Dac_g46202 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g01929 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
GSVIVT01027957001 | No alias | DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... | 0.11 | OrthoFinder output from all 47 species | |
LOC_Os04g43140.1 | LOC_Os04g43140 | DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... | 0.11 | OrthoFinder output from all 47 species | |
MA_10436248g0010 | No alias | DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... | 0.05 | OrthoFinder output from all 47 species | |
Mp5g03860.1 | No alias | DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e007582_P001 | Zm00001e007582 | DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... | 0.2 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000154 | rRNA modification | IEP | HCCA |
BP | GO:0001510 | RNA methylation | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
CC | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
MF | GO:0008168 | methyltransferase activity | IEP | HCCA |
MF | GO:0008173 | RNA methyltransferase activity | IEP | HCCA |
MF | GO:0008649 | rRNA methyltransferase activity | IEP | HCCA |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
MF | GO:0016435 | rRNA (guanine) methyltransferase activity | IEP | HCCA |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | HCCA |
MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
BP | GO:0031167 | rRNA methylation | IEP | HCCA |
BP | GO:0032259 | methylation | IEP | HCCA |
CC | GO:0034457 | Mpp10 complex | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0036265 | RNA (guanine-N7)-methylation | IEP | HCCA |
BP | GO:0042274 | ribosomal small subunit biogenesis | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0070475 | rRNA base methylation | IEP | HCCA |
BP | GO:0070476 | rRNA (guanine-N7)-methylation | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
No external refs found! |