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  5. Solyc09g090180.1.1

Solyc09g090180.1.1 (LSH4, Solyc09g090180)


Aliases : LSH4, Solyc09g090180

Description : Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana (sp|o82268|lsh3_arath : 213.0)


Gene families : OG0001118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001118_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc09g090180.1.1

Target Alias Description ECC score Gene Family Method Actions
AT2G31160 LSH3 Protein of unknown function (DUF640) 0.05 OrthoFinder output from all 47 species
AT2G42610 LSH10 Protein of unknown function (DUF640) 0.04 OrthoFinder output from all 47 species
AT3G04510 LSH2 Protein of unknown function (DUF640) 0.05 OrthoFinder output from all 47 species
AT3G23290 LSH4 No description available 0.03 OrthoFinder output from all 47 species
AT5G28490 LSH1 Protein of unknown function (DUF640) 0.05 OrthoFinder output from all 47 species
GSVIVT01028348001 LSH3 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 OrthoFinder output from all 47 species
Zm00001e030343_P002 LSH4, Zm00001e030343 Protein G1-like2 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
InterPro domains Description Start Stop
IPR006936 ALOG_dom 48 172
No external refs found!