LOC_Os03g54160.1


Description : transcription factor (MADS/AGL)


Gene families : OG_01_0000011 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000011_tree ,
OG_02_0000008 (LandPlants) Phylogenetic Tree(s): OG_02_0000008_tree ,
OG_03_0002159 (SeedPlants) Phylogenetic Tree(s): OG_03_0002159_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g54160.1
Cluster HCCA: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00218870 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AMTR_s00001p00267050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00047p00181740 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00047p00190220 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AMTR_s00066p00109320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00071p00198970 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
AT2G22630 AGL17 AGAMOUS-like 17 0.06 Archaeplastida
AT4G11880 AGL14 AGAMOUS-like 14 0.05 Archaeplastida
AT4G18960 AG K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
AT4G24540 AGL24 AGAMOUS-like 24 0.02 Archaeplastida
AT5G60910 AGL8, FUL AGAMOUS-like 8 0.03 Archaeplastida
GSVIVT01008139001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01008140001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01008560001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01008806001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01012249001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01012250001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01018450001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01035477001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Gb_03807 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Gb_05128 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os02g52340.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
MA_10434339g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.01 Archaeplastida
MA_32676g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_502016g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.09 Archaeplastida
MA_5917g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_629987g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.01 Archaeplastida
MA_63212g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_6544g0010 No alias Floral homeotic protein AGAMOUS OS=Panax ginseng... 0.05 Archaeplastida
MA_8748850g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Pp3c12_22890V3.1 No alias AGAMOUS-like 66 0.01 Archaeplastida
Pp3c14_22180V3.1 No alias AGAMOUS-like 104 0.01 Archaeplastida
Pp3c17_13070V3.1 No alias AGAMOUS-like 66 0.02 Archaeplastida
Pp3c8_6920V3.1 No alias AGAMOUS-like 66 0.01 Archaeplastida
Smo121275 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Solyc01g106710.1.1 No alias component MED19 of head module of MEDIATOR transcription... 0.02 Archaeplastida
Solyc02g089210.4.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc06g059970.4.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc08g067230.4.1 No alias No annotation 0.02 Archaeplastida
Solyc11g010570.2.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e005705_P004 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Zm00001e006950_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e012026_P002 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Zm00001e015924_P003 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e031267_P003 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e036159_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e039774_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
AMTR_s00001p00218870 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 LandPlants
AMTR_s00001p00267050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 LandPlants
AMTR_s00047p00181740 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 LandPlants
AMTR_s00047p00190220 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 LandPlants
AT1G22130 AGL104 AGAMOUS-like 104 0.01 LandPlants
AT1G77950 AGL67 AGAMOUS-like 67 0.01 LandPlants
AT2G22630 AGL17 AGAMOUS-like 17 0.06 LandPlants
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.02 LandPlants
AT3G04100 AGL57 AGAMOUS-like 57 0.02 LandPlants
AT4G11880 AGL14 AGAMOUS-like 14 0.05 LandPlants
AT4G18960 AG K-box region and MADS-box transcription factor family protein 0.02 LandPlants
AT4G37435 No alias No description available 0.01 LandPlants
AT5G20240 PI K-box region and MADS-box transcription factor family protein 0.01 LandPlants
AT5G60910 AGL8, FUL AGAMOUS-like 8 0.03 LandPlants
GSVIVT01002442001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 LandPlants
GSVIVT01008139001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 LandPlants
GSVIVT01008140001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 LandPlants
GSVIVT01008560001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
GSVIVT01008806001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 LandPlants
GSVIVT01012250001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
GSVIVT01018450001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
GSVIVT01021534001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
GSVIVT01035477001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
Gb_03068 No alias transcription factor (MADS/AGL) 0.01 LandPlants
Gb_03807 No alias transcription factor (MADS/AGL) 0.04 LandPlants
MA_10434339g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.01 LandPlants
MA_32676g0010 No alias transcription factor (MADS/AGL) 0.02 LandPlants
MA_502016g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.09 LandPlants
MA_629987g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.01 LandPlants
MA_63212g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_8748850g0010 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Pp3c12_22890V3.1 No alias AGAMOUS-like 66 0.01 LandPlants
Pp3c14_22180V3.1 No alias AGAMOUS-like 104 0.01 LandPlants
Pp3c17_13070V3.1 No alias AGAMOUS-like 66 0.02 LandPlants
Pp3c8_6920V3.1 No alias AGAMOUS-like 66 0.01 LandPlants
Solyc01g106710.1.1 No alias component MED19 of head module of MEDIATOR transcription... 0.02 LandPlants
Solyc02g089210.4.1 No alias transcription factor (MADS/AGL) 0.04 LandPlants
Solyc06g059970.4.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Solyc08g067230.4.1 No alias No annotation 0.02 LandPlants
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e003667_P001 No alias transcription factor (MADS/AGL) 0.01 LandPlants
Zm00001e005705_P004 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Zm00001e006950_P001 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e012026_P002 No alias transcription factor (MADS/AGL) 0.04 LandPlants
Zm00001e013738_P001 No alias transcription factor (MADS/AGL) 0.01 LandPlants
Zm00001e026007_P004 No alias no hits & (original description: none) 0.01 LandPlants
Zm00001e031267_P003 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e039774_P001 No alias transcription factor (MADS/AGL) 0.02 LandPlants
AT5G60910 AGL8, FUL AGAMOUS-like 8 0.03 SeedPlants
GSVIVT01008140001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 SeedPlants
Zm00001e005705_P004 No alias transcription factor (MADS/AGL) 0.03 SeedPlants
Zm00001e012026_P002 No alias transcription factor (MADS/AGL) 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
IPR002487 TF_Kbox 84 171
No external refs found!