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  5. Solyc09g083110.3.1

Solyc09g083110.3.1 (Solyc09g083110)


Aliases : Solyc09g083110

Description : Pentatricopeptide repeat-containing protein At3g23020 OS=Arabidopsis thaliana (sp|q9ls88|pp250_arath : 938.0)


Gene families : OG0006545 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006545_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g083110.3.1
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
AT1G73710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G23020 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g014933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05556 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g15281 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.27G000500.1 Ceric.27G000500 not classified & original description: pacid=50606226... 0.02 OrthoFinder output from all 47 species
Dcu_g09918 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01018090001 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.07 OrthoFinder output from all 47 species
Gb_11434 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.06 OrthoFinder output from all 47 species
LOC_Os07g28900.1 LOC_Os07g28900 Pentatricopeptide repeat-containing protein At1g73710... 0.03 OrthoFinder output from all 47 species
Len_g12772 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10426616g0010 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.06 OrthoFinder output from all 47 species
Sam_g07959 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo77736 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 769 796
IPR002885 Pentatricopeptide_repeat 805 833
IPR002885 Pentatricopeptide_repeat 631 674
IPR002885 Pentatricopeptide_repeat 420 465
IPR002885 Pentatricopeptide_repeat 701 744
IPR002885 Pentatricopeptide_repeat 872 913
IPR002885 Pentatricopeptide_repeat 290 334
IPR002885 Pentatricopeptide_repeat 488 535
No external refs found!