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  5. Solyc09g083080.4.1

Solyc09g083080.4.1 (Solyc09g083080)


Aliases : Solyc09g083080

Description : snoRNP scaffold component Nop58 of snoRNP rRNA methylation complex


Gene families : OG0004943 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004943_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g083080.4.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00260990 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.08 OrthoFinder output from all 47 species
AT3G05060 No alias NOP56-like pre RNA processing ribonucleoprotein 0.11 OrthoFinder output from all 47 species
AT5G27120 No alias NOP56-like pre RNA processing ribonucleoprotein 0.12 OrthoFinder output from all 47 species
Ala_g11234 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Aop_g13968 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.05 OrthoFinder output from all 47 species
Azfi_s0045.g029768 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.07 OrthoFinder output from all 47 species
Ceric.30G067400.1 Ceric.30G067400 scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021350.31 No alias RNA processing.RNA modification.rRNA/tRNA... 0.1 OrthoFinder output from all 47 species
Cre10.g441400 No alias RNA processing.RNA modification.rRNA/tRNA... 0.16 OrthoFinder output from all 47 species
Dac_g17149 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.05 OrthoFinder output from all 47 species
Dcu_g04026 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Dde_g01696 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
GSVIVT01021905001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.15 OrthoFinder output from all 47 species
Gb_26926 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.12 OrthoFinder output from all 47 species
LOC_Os03g22740.1 LOC_Os03g22740 snoRNP scaffold component Nop58 of snoRNP rRNA... 0.08 OrthoFinder output from all 47 species
Len_g21735 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species
Len_g27989 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Lfl_g06618 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
MA_513089g0010 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.09 OrthoFinder output from all 47 species
Mp2g00370.1 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.15 OrthoFinder output from all 47 species
Msp_g14051 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Nbi_g12240 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017383 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Sam_g19587 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.07 OrthoFinder output from all 47 species
Smo146841 No alias RNA processing.RNA modification.rRNA/tRNA... 0.08 OrthoFinder output from all 47 species
Spa_g15033 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.13 OrthoFinder output from all 47 species
Tin_g28216 No alias scaffold component *(Nop58) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Zm00001e038207_P001 Zm00001e038207 snoRNP scaffold component Nop58 of snoRNP rRNA... 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR012974 NOP58/56_N 7 70
IPR002687 Nop_dom 171 399
No external refs found!