LOC_Os03g53000.1

Description : component XRCC4 of LIG4-XRCC4 ligase complex

Gene families : OG_01_0006777 (Archaeplastida) Phylogenetic Tree(s): OG_01_0006777_tree ,
OG_02_0005545 (LandPlants) Phylogenetic Tree(s): OG_02_0005545_tree ,
OG_03_0006775 (SeedPlants) Phylogenetic Tree(s): OG_03_0006775_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g53000.1
Cluster	HCCA: Cluster_353

Target	Alias	Description	ECC score	Gene Family Method
Zm00001e005621_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
AMTR_s00049p00133960	evm_27.TU.AmTr_v1...	DNA damage response.DNA repair mechanisms.nonhomologous...	0.01	LandPlants
Zm00001e005621_P001	No alias	no hits & (original description: none)	0.03	LandPlants
AMTR_s00049p00133960	evm_27.TU.AmTr_v1...	DNA damage response.DNA repair mechanisms.nonhomologous...	0.01	SeedPlants
Zm00001e005621_P001	No alias	no hits & (original description: none)	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006302	double-strand break repair	IEA	Interproscan
BP	GO:0006310	DNA recombination	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR010585	DNA_repair_prot_XRCC4	40	248

External Links

No external refs found!

LOC_Os03g53000.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation