LOC_Os03g52470.1


Description : SSU processome assembly factor (UTP4/PCN)


Gene families : OG_01_0004823 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004823_tree ,
OG_02_0004498 (LandPlants) Phylogenetic Tree(s): OG_02_0004498_tree ,
OG_03_0005446 (SeedPlants) Phylogenetic Tree(s): OG_03_0005446_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g52470.1
Cluster HCCA: Cluster_312

Target Alias Description ECC score Gene Family Method Actions
AT4G07410 No alias Transducin family protein / WD-40 repeat family protein 0.06 Archaeplastida
Cpa|evm.model.tig00000852.39 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 Archaeplastida
Cre13.g606850 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
GSVIVT01009321001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
Mp5g05000.1 No alias SSU processome assembly factor (UTP4/PCN) 0.04 Archaeplastida
Pp3c19_13580V3.1 No alias transducin family protein / WD-40 repeat family protein 0.02 Archaeplastida
Pp3c22_14490V3.1 No alias Transducin family protein / WD-40 repeat family protein 0.05 Archaeplastida
Smo74975 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 Archaeplastida
Solyc04g077680.3.1 No alias SSU processome assembly factor (UTP4/PCN) 0.06 Archaeplastida
Zm00001e005587_P002 No alias SSU processome assembly factor (UTP4/PCN) 0.05 Archaeplastida
Zm00001e012090_P001 No alias SSU processome assembly factor (UTP4/PCN) 0.03 Archaeplastida
AT4G07410 No alias Transducin family protein / WD-40 repeat family protein 0.06 LandPlants
GSVIVT01009321001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 LandPlants
Mp5g05000.1 No alias SSU processome assembly factor (UTP4/PCN) 0.04 LandPlants
Pp3c19_13580V3.1 No alias transducin family protein / WD-40 repeat family protein 0.02 LandPlants
Pp3c22_14490V3.1 No alias Transducin family protein / WD-40 repeat family protein 0.05 LandPlants
Smo74975 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 LandPlants
Solyc04g077680.3.1 No alias SSU processome assembly factor (UTP4/PCN) 0.05 LandPlants
Zm00001e005587_P002 No alias SSU processome assembly factor (UTP4/PCN) 0.05 LandPlants
Zm00001e012090_P001 No alias SSU processome assembly factor (UTP4/PCN) 0.03 LandPlants
AT4G07410 No alias Transducin family protein / WD-40 repeat family protein 0.06 SeedPlants
GSVIVT01009321001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 SeedPlants
Solyc04g077680.3.1 No alias SSU processome assembly factor (UTP4/PCN) 0.05 SeedPlants
Zm00001e005587_P002 No alias SSU processome assembly factor (UTP4/PCN) 0.05 SeedPlants
Zm00001e012090_P001 No alias SSU processome assembly factor (UTP4/PCN) 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001680 WD40_repeat 212 235
No external refs found!