Solyc09g010500.3.1 (NRPB6B, NRPE6B, Solyc09g010500)

Aliases : NRPB6B, NRPE6B, Solyc09g010500

Description : subunit 6 of RNA polymerase

Gene families : OG0004292 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004292_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc09g010500.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00069p00112860	NRPB6B, NRPE6B,...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.04	OrthoFinder output from all 47 species
AT2G04630	NRPB6B, NRPE6B	RNA polymerase Rpb6	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021589.12	NRPE6A, NRPD6A, NRPB6A	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder output from all 47 species
Cre01.g002200	NRPE6A, NRPD6A, NRPB6A	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder output from all 47 species
MA_131181g0010	NRPE6A, NRPD6A, NRPB6A	DNA-directed RNA polymerases II, IV and V subunit 6A...	0.03	OrthoFinder output from all 47 species
Mp1g19280.1	NRPE6A, NRPD6A, NRPB6A	subunit 6 of RNA polymerase	0.02	OrthoFinder output from all 47 species
Zm00001e004907_P001	NRPE6A, NRPD6A,...	subunit 6 of RNA polymerase	0.03	OrthoFinder output from all 47 species
Zm00001e012477_P001	NRPE6A, NRPD6A,...	subunit 6 of RNA polymerase	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR006110	Pol_omega/Rpo6/RPB6	61	112

External Links

No external refs found!

Solyc09g010500.3.1 (NRPB6B, NRPE6B, Solyc09g010500)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation