1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc09g009890.4.1

Solyc09g009890.4.1 (Solyc09g009890)


Aliases : Solyc09g009890

Description : Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana (sp|q9asp6|hnrpq_arath : 365.0)


Gene families : OG0002016 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002016_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g009890.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00031p00165100 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Adi_g109709 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g00675 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0050.g031136 No alias not classified & original description: CDS=145-1557 0.04 OrthoFinder output from all 47 species
Azfi_s0390.g067701 No alias not classified & original description: CDS=204-1688 0.03 OrthoFinder output from all 47 species
Cba_g13341 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g16114 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os11g14430.2 LOC_Os11g14430 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_10435174g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Ppi_g15227 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g34275 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 287 356
IPR000504 RRM_dom 114 184
IPR000504 RRM_dom 194 261
No external refs found!