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Aliases : STV1, RPL24, RPL24B, Solyc09g008800
Description : pri-miRNA recruitment factor (STV1). component RPL24 of LSU proteome component
Gene families : OG0002539 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002539_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00069p00095150 | RPL24A,... | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.21 | OrthoFinder output from all 47 species | |
| AMTR_s00119p00055300 | RPL24A,... | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.17 | OrthoFinder output from all 47 species | |
| AT2G36620 | RPL24A | ribosomal protein L24 | 0.27 | OrthoFinder output from all 47 species | |
| AT3G53020 | STV1, RPL24, RPL24B | Ribosomal protein L24e family protein | 0.3 | OrthoFinder output from all 47 species | |
| Adi_g016157 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g039871 | STV1, RPL24, RPL24B | component *(eL24) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Aev_g26136 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g20428 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.14 | OrthoFinder output from all 47 species | |
| Ala_g22691 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Als_g11890 | STV1, RPL24, RPL24B | component *(eL24) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g23672 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g25230 | STV1, RPL24, RPL24B | component *(eL24) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g44809 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g00606 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g07149 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.2 | OrthoFinder output from all 47 species | |
| Aop_g22551 | STV1, RPL24, RPL24B | component *(eL24) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0081.g038645 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.21 | OrthoFinder output from all 47 species | |
| Cba_g10268 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Cba_g26139 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.07 | OrthoFinder output from all 47 species | |
| Ceric.24G022200.1 | RPL24A, Ceric.24G022200 | component *(eL24) of large ribosomal-subunit (LSU)... | 0.09 | OrthoFinder output from all 47 species | |
| Ceric.27G010000.1 | STV1, RPL24,... | component *(eL24) of large ribosomal-subunit (LSU)... | 0.17 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001093.9 | STV1, RPL24, RPL24B | No description available | 0.22 | OrthoFinder output from all 47 species | |
| Cre09.g391097 | STV1, RPL24, RPL24B | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.2 | OrthoFinder output from all 47 species | |
| Dac_g13575 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.15 | OrthoFinder output from all 47 species | |
| Dac_g29270 | STV1, RPL24, RPL24B | component *(eL24) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g14497 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g45784 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.15 | OrthoFinder output from all 47 species | |
| Ehy_g05371 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g21948 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.1 | OrthoFinder output from all 47 species | |
| GSVIVT01010601001 | RPL24A | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.31 | OrthoFinder output from all 47 species | |
| GSVIVT01033743001 | STV1, RPL24, RPL24B | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.18 | OrthoFinder output from all 47 species | |
| GSVIVT01034676001 | RPL24A | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.12 | OrthoFinder output from all 47 species | |
| Gb_07396 | STV1, RPL24, RPL24B | pri-miRNA recruitment factor (STV1). component RPL24 of... | 0.09 | OrthoFinder output from all 47 species | |
| LOC_Os01g59990.1 | STV1, RPL24,... | pri-miRNA recruitment factor (STV1). component RPL24 of... | 0.25 | OrthoFinder output from all 47 species | |
| LOC_Os07g12250.1 | STV1, RPL24,... | pri-miRNA recruitment factor (STV1). component RPL24 of... | 0.19 | OrthoFinder output from all 47 species | |
| Lfl_g00331 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| MA_13787g0010 | RPL24A | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| MA_14639g0010 | STV1, RPL24, RPL24B | pri-miRNA recruitment factor (STV1). component RPL24 of... | 0.03 | OrthoFinder output from all 47 species | |
| Mp5g17510.1 | RPL24A | pri-miRNA recruitment factor (STV1). component RPL24 of... | 0.3 | OrthoFinder output from all 47 species | |
| Msp_g04603 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Msp_g35018 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g00286 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Pir_g10553 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Pp3c13_10770V3.1 | RPL24A, Pp3c13_10770 | ribosomal protein L24 | 0.18 | OrthoFinder output from all 47 species | |
| Pp3c3_8930V3.1 | RPL24A, Pp3c3_8930 | Ribosomal protein L24e family protein | 0.1 | OrthoFinder output from all 47 species | |
| Pp3c4_25160V3.1 | RPL24A, Pp3c4_25160 | ribosomal protein L24 | 0.09 | OrthoFinder output from all 47 species | |
| Ppi_g06076 | STV1, RPL24, RPL24B | component *(eL24) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g18242 | STV1, RPL24, RPL24B | component *(eL24) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0010.g004929 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g04326 | No alias | component *(eL24) of large ribosomal-subunit (LSU)... | 0.27 | OrthoFinder output from all 47 species | |
| Sam_g06345 | No alias | component *(eL24) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g06964 | No alias | component *(eL24) of large ribosomal-subunit (LSU)... | 0.15 | OrthoFinder output from all 47 species | |
| Smo438784 | STV1, RPL24, RPL24B | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g03066 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.16 | OrthoFinder output from all 47 species | |
| Spa_g08054 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g31362 | RPL24A | component *(eL24) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g23099 | STV1, RPL24, RPL24B | component *(eL24) of large ribosomal-subunit (LSU)... | 0.24 | OrthoFinder output from all 47 species | |
| Zm00001e004947_P001 | STV1, RPL24,... | pri-miRNA recruitment factor (STV1). component RPL24 of... | 0.34 | OrthoFinder output from all 47 species | |
| Zm00001e012463_P004 | STV1, RPL24,... | pri-miRNA recruitment factor (STV1). component RPL24 of... | 0.33 | OrthoFinder output from all 47 species | |
| Zm00001e027315_P001 | STV1, RPL24,... | pri-miRNA recruitment factor (STV1). component RPL24 of... | 0.14 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0008097 | 5S rRNA binding | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000988 | Ribosomal_L24e-rel | 4 | 67 |
| No external refs found! |