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Aliases : Solyc09g007680
Description : RING-v-class E3 ligase
Gene families : OG0000484 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000484_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc09g007680.4.1 | |
| Cluster | HCCA: Cluster_7 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G59000 | No alias | RING/FYVE/PHD zinc finger superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
| Aev_g22868 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0096.g043766 | No alias | not classified & original description: CDS=488-1357 | 0.06 | OrthoFinder output from all 47 species | |
| Dcu_g28580 | No alias | E3 ubiquitin ligase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g10273 | No alias | E3 ubiquitin ligase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os04g01490.1 | LOC_Os04g01490 | RING-v-class E3 ligase | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g55685 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e031805_P001 | Zm00001e031805 | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| MF | GO:0043531 | ADP binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR011016 | Znf_RING-CH | 272 | 319 |
| No external refs found! |