Solyc09g005360.3.1 (AL1, Solyc09g005360)

Aliases : AL1, Solyc09g005360

Description : Alfin-like transcription factor

Gene families : OG0000258 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000258_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc09g005360.3.1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g008297	AL7	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Adi_g011436	AL7	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Adi_g013182	AL2	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Cba_g17630	AL1	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Lfl_g38122	AL4	methylation reader Alfin of PRC1 complex & original...	0.03	OrthoFinder output from all 47 species
Pir_g03364	AL2	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Ppi_g08741	AL2	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Sam_g18886	No alias	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Sam_g19302	No alias	methylation reader Alfin of PRC1 complex & original...	0.02	OrthoFinder output from all 47 species
Tin_g01597	AL1	methylation reader Alfin of PRC1 complex & original...	0.05	OrthoFinder output from all 47 species
Zm00001e025829_P001	AL2, Zm00001e025829	Alfin-like transcription factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0042393	histone binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030118	clathrin coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030125	clathrin vesicle coat	IEP	HCCA
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	HCCA
CC	GO:0030132	clathrin coat of coated pit	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR019787	Znf_PHD-finger	188	235
IPR021998	Alfin_N	10	135

External Links

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