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  5. Solyc08g082850.3.1

Solyc08g082850.3.1 (GCN3, ATGCN3, Solyc08g082850)


Aliases : GCN3, ATGCN3, Solyc08g082850

Description : ABC transporter F family member 3 OS=Arabidopsis thaliana (sp|q8h0v6|ab3f_arath : 1082.0)


Gene families : OG0006468 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006468_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g082850.3.1

Target Alias Description ECC score Gene Family Method Actions
Ala_g02506 GCN3, ATGCN3 regulatory protein *(GCN20) of eIF2-alpha kinase... 0.02 OrthoFinder output from all 47 species
Dcu_g01906 GCN3, ATGCN3 regulatory protein *(GCN20) of eIF2-alpha kinase... 0.04 OrthoFinder output from all 47 species
GSVIVT01019609001 GCN3, ATGCN3 ABC transporter F family member 3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Lfl_g24940 GCN3, ATGCN3 regulatory protein *(GCN20) of eIF2-alpha kinase... 0.03 OrthoFinder output from all 47 species
Ppi_g04633 GCN3, ATGCN3 regulatory protein *(GCN20) of eIF2-alpha kinase... 0.03 OrthoFinder output from all 47 species
Tin_g02806 GCN3, ATGCN3 regulatory protein *(GCN20) of eIF2-alpha kinase... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:0140352 export from cell IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 196 371
IPR032781 ABC_tran_Xtn 410 491
IPR003439 ABC_transporter-like_ATP-bd 524 654
No external refs found!