Solyc08g082630.3.1 (ARF9, Solyc08g082630)


Aliases : ARF9, Solyc08g082630

Description : transcription factor (ARF)


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g082630.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00200760 ARF4,... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
AMTR_s00025p00198750 ARF19, IAA22,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AT5G60450 ARF4 auxin response factor 4 0.03 OrthoFinder output from all 47 species
Aob_g22072 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12905 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0065.g035933 ARF6 not classified & original description: CDS=1-678 0.1 OrthoFinder output from all 47 species
Azfi_s0697.g082598 ARF16 ARF-type transcription factor & original description: CDS=1-2376 0.03 OrthoFinder output from all 47 species
Cba_g17172 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g03840 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g07132 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g30682 ARF10 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011008001 HSS, ARF1-BP, ARF2, ORE14 RNA biosynthesis.transcriptional activation.B3... 0.05 OrthoFinder output from all 47 species
Gb_39786 ARF16 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os04g36054.1 ARF1, LOC_Os04g36054 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
LOC_Os04g43910.1 ARF10, LOC_Os04g43910 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
LOC_Os10g33940.1 ARF16, LOC_Os10g33940 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Len_g17368 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g10591 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g41869 ARF17 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55449 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e012670_P001 ARF16, Zm00001e012670 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e013061_P001 ARF16, Zm00001e013061 transcription factor (ARF) 0.06 OrthoFinder output from all 47 species
Zm00001e016366_P002 ARF11, Zm00001e016366 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Zm00001e030325_P003 ARF6, Zm00001e030325 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR010525 ARF_dom 256 335
IPR033389 AUX/IAA_dom 555 601
IPR033389 AUX/IAA_dom 610 650
IPR003340 B3_DNA-bd 130 230
No external refs found!