LOC_Os03g51230.2

Description : chromatin remodeling factor (DDM1)

Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0005519 (LandPlants) Phylogenetic Tree(s): OG_02_0005519_tree ,
OG_03_0005694 (SeedPlants) Phylogenetic Tree(s): OG_03_0005694_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g51230.2
Cluster	HCCA: Cluster_173

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00057p00173840	evm_27.TU.AmTr_v1...	Chromatin organisation.chromatin remodeling...	0.02	Archaeplastida
AT2G25170	PKL, GYM, CHR6,...	chromatin remodeling factor CHD3 (PICKLE)	0.02	Archaeplastida
AT5G66750	CHR01, CHR1,...	chromatin remodeling 1	0.02	Archaeplastida
Cpa\|evm.model.tig00000144.188	No alias	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana	0.01	Archaeplastida
Cre03.g158550	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.03	Archaeplastida
Cre09.g390000	No alias	RNA biosynthesis.transcriptional activation.PHD finger...	0.01	Archaeplastida
GSVIVT01018979001	No alias	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana	0.05	Archaeplastida
Gb_16888	No alias	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana...	0.05	Archaeplastida
MA_102992g0010	No alias	Probable chromatin-remodeling complex ATPase chain...	0.02	Archaeplastida
MA_104034g0010	No alias	chromatin remodeling factor (DDM1)	0.05	Archaeplastida
MA_42406g0010	No alias	chromatin remodeling factor (DDM1)	0.04	Archaeplastida
Mp4g12200.1	No alias	chromatin remodeling factor (DDM1)	0.04	Archaeplastida
Pp3c17_19520V3.1	No alias	chromatin remodeling 1	0.04	Archaeplastida
Pp3c20_11500V3.1	No alias	chromatin remodeling 5	0.03	Archaeplastida
Smo102612	No alias	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana	0.04	Archaeplastida
Solyc02g062780.4.1	No alias	chromatin remodeling factor (DDM1)	0.04	Archaeplastida
Solyc02g085390.4.1	No alias	chromatin remodeling factor (DDM1)	0.08	Archaeplastida
Solyc06g054560.3.1	No alias	chromatin remodeling factor (Iswi)	0.03	Archaeplastida
Zm00001e005517_P002	No alias	chromatin remodeling factor (DDM1)	0.06	Archaeplastida
Zm00001e011541_P001	No alias	chromatin remodeling factor (DDM1)	0.04	Archaeplastida
Zm00001e013442_P001	No alias	chromatin remodeling factor (Snf2)	0.02	Archaeplastida
Zm00001e017643_P001	No alias	chromatin remodeling factor (Iswi)	0.05	Archaeplastida
AT5G66750	CHR01, CHR1,...	chromatin remodeling 1	0.02	LandPlants
GSVIVT01018979001	No alias	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana	0.04	LandPlants
Gb_16888	No alias	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana...	0.04	LandPlants
MA_104034g0010	No alias	chromatin remodeling factor (DDM1)	0.03	LandPlants
MA_42406g0010	No alias	chromatin remodeling factor (DDM1)	0.03	LandPlants
Mp4g12200.1	No alias	chromatin remodeling factor (DDM1)	0.04	LandPlants
Pp3c17_19520V3.1	No alias	chromatin remodeling 1	0.03	LandPlants
Solyc02g062780.4.1	No alias	chromatin remodeling factor (DDM1)	0.04	LandPlants
Solyc02g085390.4.1	No alias	chromatin remodeling factor (DDM1)	0.08	LandPlants
Zm00001e005517_P002	No alias	chromatin remodeling factor (DDM1)	0.05	LandPlants
Zm00001e011541_P001	No alias	chromatin remodeling factor (DDM1)	0.04	LandPlants
AT5G66750	CHR01, CHR1,...	chromatin remodeling 1	0.02	SeedPlants
GSVIVT01018979001	No alias	ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana	0.04	SeedPlants
MA_104034g0010	No alias	chromatin remodeling factor (DDM1)	0.02	SeedPlants
MA_42406g0010	No alias	chromatin remodeling factor (DDM1)	0.03	SeedPlants
Solyc02g062780.4.1	No alias	chromatin remodeling factor (DDM1)	0.04	SeedPlants
Solyc02g085390.4.1	No alias	chromatin remodeling factor (DDM1)	0.09	SeedPlants
Zm00001e005517_P002	No alias	chromatin remodeling factor (DDM1)	0.05	SeedPlants
Zm00001e011541_P001	No alias	chromatin remodeling factor (DDM1)	0.04	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000330	SNF2_dom	293	587
IPR001650	Helicase_C	614	723

External Links

No external refs found!

LOC_Os03g51230.2

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation