1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc08g079660.3.1

Solyc08g079660.3.1 (Solyc08g079660)


Aliases : Solyc08g079660

Description : plant-specific stabilizing component ClpT of chloroplast Clp-type protease complex


Gene families : OG0007488 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007488_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g079660.3.1

Target Alias Description ECC score Gene Family Method Actions
AT4G12060 No alias Double Clp-N motif protein 0.13 OrthoFinder output from all 47 species
Adi_g100657 No alias plant-specific stabilizing component *(ClpT) of... 0.05 OrthoFinder output from all 47 species
Aob_g02846 No alias plant-specific stabilizing component *(ClpT) of... 0.03 OrthoFinder output from all 47 species
Aop_g19961 No alias plant-specific stabilizing component *(ClpT) of... 0.02 OrthoFinder output from all 47 species
Azfi_s0072.g037001 No alias plant-specific stabilizing component *(ClpT) of... 0.07 OrthoFinder output from all 47 species
Cba_g05046 No alias plant-specific stabilizing component *(ClpT) of... 0.05 OrthoFinder output from all 47 species
Ceric.02G099200.1 Ceric.02G099200 plant-specific stabilizing component *(ClpT) of... 0.05 OrthoFinder output from all 47 species
Dcu_g32107 No alias plant-specific stabilizing component *(ClpT) of... 0.05 OrthoFinder output from all 47 species
Dde_g16574 No alias plant-specific stabilizing component *(ClpT) of... 0.03 OrthoFinder output from all 47 species
Ehy_g10685 No alias plant-specific stabilizing component *(ClpT) of... 0.03 OrthoFinder output from all 47 species
GSVIVT01018510001 No alias Protein degradation.peptidase families.serine-type... 0.04 OrthoFinder output from all 47 species
LOC_Os03g14280.1 LOC_Os03g14280 plant-specific stabilizing component ClpT of chloroplast... 0.11 OrthoFinder output from all 47 species
Len_g10201 No alias plant-specific stabilizing component *(ClpT) of... 0.06 OrthoFinder output from all 47 species
Mp6g19150.1 No alias plant-specific stabilizing component ClpT of chloroplast... 0.2 OrthoFinder output from all 47 species
Ppi_g32744 No alias plant-specific stabilizing component *(ClpT) of... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007541 No alias plant-specific stabilizing component *(ClpT) of... 0.06 OrthoFinder output from all 47 species
Sam_g11082 No alias plant-specific stabilizing component *(ClpT) of... 0.03 OrthoFinder output from all 47 species
Spa_g04464 No alias plant-specific stabilizing component *(ClpT) of... 0.05 OrthoFinder output from all 47 species
Zm00001e001033_P002 Zm00001e001033 plant-specific stabilizing component ClpT of chloroplast... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004418 hydroxymethylbilane synthase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004176 Clp_R_dom 103 155
IPR004176 Clp_R_dom 192 231
No external refs found!