Solyc08g078800.1.1 (ATHAM3, HAM3, LOM3,...)


Aliases : ATHAM3, HAM3, LOM3, Solyc08g078800

Description : transcription factor (GRAS)


Gene families : OG0002830 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002830_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g078800.1.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g106923 No alias GRAS-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g107878 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g18054 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17369 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.08G011800.1 HAM2, LOM2,... GRAS-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ehy_g03844 No alias GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Gb_28344 ATHAM3, HAM3, LOM3 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
LOC_Os10g40390.1 ATHAM3, HAM3,... transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Nbi_g02436 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g13262 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e000046_P001 ATHAM3, HAM3,... transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Zm00001e002296_P001 ATHAM3, HAM3,... transcription factor (GRAS) 0.05 OrthoFinder output from all 47 species
Zm00001e007302_P001 ATHAM3, HAM3,... transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species
Zm00001e015355_P002 ATHAM3, HAM3,... transcription factor (GRAS) 0.1 OrthoFinder output from all 47 species
Zm00001e023181_P003 ATHAM3, HAM3,... transcription factor (GRAS) 0.09 OrthoFinder output from all 47 species
Zm00001e041505_P001 ATHAM3, HAM3,... transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 113 473
No external refs found!